Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   DDT10_RS02020 Genome accession   NZ_CP029071
Coordinates   429719..429838 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 424719..434838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS02005 (DDT10_02005) - 426331..427014 (+) 684 WP_007410267.1 response regulator transcription factor -
  DDT10_RS02010 (DDT10_02010) - 427001..428434 (+) 1434 WP_162782989.1 HAMP domain-containing sensor histidine kinase -
  DDT10_RS02015 (DDT10_02015) rapC 428587..429735 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  DDT10_RS02020 (DDT10_02020) phrC 429719..429838 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DDT10_RS02025 (DDT10_02025) - 429987..430082 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  DDT10_RS02030 (DDT10_02030) - 430177..431541 (-) 1365 WP_033575080.1 aspartate kinase -
  DDT10_RS02035 (DDT10_02035) ceuB 431955..432908 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  DDT10_RS02040 (DDT10_02040) - 432898..433845 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  DDT10_RS02045 (DDT10_02045) - 433839..434597 (+) 759 WP_053573731.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=290009 DDT10_RS02020 WP_003156334.1 429719..429838(+) (phrC) [Bacillus amyloliquefaciens strain ALB79]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=290009 DDT10_RS02020 WP_003156334.1 429719..429838(+) (phrC) [Bacillus amyloliquefaciens strain ALB79]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment