Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   DDT10_RS01825 Genome accession   NZ_CP029071
Coordinates   370305..370703 (-) Length   132 a.a.
NCBI ID   WP_020955304.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365305..375703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS01800 (DDT10_01800) - 365476..366678 (+) 1203 WP_014416870.1 GTP-binding protein -
  DDT10_RS01805 (DDT10_01805) - 366743..367879 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  DDT10_RS01810 (DDT10_01810) - 367894..368328 (+) 435 WP_012116767.1 RDD family protein -
  DDT10_RS01815 (DDT10_01815) - 368401..368724 (+) 324 WP_007409357.1 YckD family protein -
  DDT10_RS01820 (DDT10_01820) - 368828..370264 (+) 1437 WP_053573745.1 family 1 glycosylhydrolase -
  DDT10_RS01825 (DDT10_01825) nin/comJ 370305..370703 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  DDT10_RS01830 (DDT10_01830) nucA/comI 370724..371161 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DDT10_RS01835 (DDT10_01835) hxlB 371520..372077 (-) 558 WP_053573744.1 6-phospho-3-hexuloisomerase -
  DDT10_RS01840 (DDT10_01840) hxlA 372074..372709 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  DDT10_RS01845 (DDT10_01845) - 372941..373303 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.97 Da        Isoelectric Point: 4.9712

>NTDB_id=290006 DDT10_RS01825 WP_020955304.1 370305..370703(-) (nin/comJ) [Bacillus amyloliquefaciens strain ALB79]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=290006 DDT10_RS01825 WP_020955304.1 370305..370703(-) (nin/comJ) [Bacillus amyloliquefaciens strain ALB79]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment