Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DDT09_RS20385 Genome accession   NZ_CP029070
Coordinates   345909..346073 (+) Length   54 a.a.
NCBI ID   WP_269194677.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 340909..351073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS20380 srfAB 342854..345844 (+) 2991 Protein_309 surfactin non-ribosomal peptide synthetase SrfAB -
  DDT09_RS20385 comS 345909..346073 (+) 165 WP_269194677.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6211.19 Da        Isoelectric Point: 11.7559

>NTDB_id=289999 DDT09_RS20385 WP_269194677.1 345909..346073(+) (comS) [Bacillus amyloliquefaciens strain ALB69]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=289999 DDT09_RS20385 WP_269194677.1 345909..346073(+) (comS) [Bacillus amyloliquefaciens strain ALB69]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5

Multiple sequence alignment