Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECIAI1_RS19010 Genome accession   NC_011741
Coordinates   3882574..3883242 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli IAI1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3877574..3888242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI1_RS18980 (ECIAI1_3802) rfaQ 3877761..3878819 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECIAI1_RS18985 (ECIAI1_3803) waaA 3879223..3880500 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECIAI1_RS18990 (ECIAI1_3804) coaD 3880508..3880987 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECIAI1_RS18995 (ECIAI1_3805) mutM 3881026..3881835 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECIAI1_RS19000 (ECIAI1_3806) rpmG 3881933..3882100 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECIAI1_RS19005 (ECIAI1_3807) rpmB 3882121..3882357 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECIAI1_RS19010 (ECIAI1_3809) radC 3882574..3883242 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  ECIAI1_RS19015 (ECIAI1_3810) coaBC 3883414..3884634 (+) 1221 WP_000050109.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECIAI1_RS19020 (ECIAI1_3811) dut 3884612..3885070 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ECIAI1_RS19025 (ECIAI1_3812) slmA 3885177..3885773 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECIAI1_RS19030 (ECIAI1_3813) pyrE 3885810..3886451 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ECIAI1_RS19035 (ECIAI1_3814) rph 3886516..3887232 (-) 717 WP_001247089.1 ribonuclease PH -
  ECIAI1_RS19040 (ECIAI1_3815) yicC 3887359..3888222 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=28997 ECIAI1_RS19010 WP_001297375.1 3882574..3883242(-) (radC) [Escherichia coli IAI1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=28997 ECIAI1_RS19010 WP_001297375.1 3882574..3883242(-) (radC) [Escherichia coli IAI1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGTTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496