Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DDT09_RS12520 Genome accession   NZ_CP029070
Coordinates   2559447..2560214 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2554447..2565214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS12500 (DDT09_12500) - 2554649..2555461 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  DDT09_RS12505 (DDT09_12505) ccpN 2555487..2556125 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  DDT09_RS12510 (DDT09_12510) glyS 2556226..2558265 (-) 2040 WP_061862404.1 glycine--tRNA ligase subunit beta -
  DDT09_RS12515 (DDT09_12515) glyQ 2558258..2559145 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DDT09_RS12520 (DDT09_12520) recO 2559447..2560214 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  DDT09_RS12525 (DDT09_12525) - 2560251..2560394 (-) 144 WP_007408286.1 YqzL family protein -
  DDT09_RS12530 (DDT09_12530) era 2560550..2561455 (-) 906 WP_007408285.1 GTPase Era -
  DDT09_RS12535 (DDT09_12535) - 2561436..2561846 (-) 411 WP_003152976.1 cytidine deaminase -
  DDT09_RS12540 (DDT09_12540) - 2561970..2562344 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DDT09_RS12545 (DDT09_12545) ybeY 2562325..2562798 (-) 474 WP_061862405.1 rRNA maturation RNase YbeY -
  DDT09_RS12550 (DDT09_12550) - 2562799..2564931 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=289969 DDT09_RS12520 WP_007408287.1 2559447..2560214(-) (recO) [Bacillus amyloliquefaciens strain ALB69]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=289969 DDT09_RS12520 WP_007408287.1 2559447..2560214(-) (recO) [Bacillus amyloliquefaciens strain ALB69]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGA
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment