Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   EJJ34_RS18935 Genome accession   NZ_CP034484
Coordinates   3562644..3563357 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3557644..3568357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ34_RS18915 (EJJ34_18920) ghrB 3557788..3558765 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  EJJ34_RS18920 (EJJ34_18925) psdB 3558803..3560743 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  EJJ34_RS18925 (EJJ34_18930) psdA 3560718..3561497 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  EJJ34_RS18930 (EJJ34_18935) psdS 3561580..3562650 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  EJJ34_RS18935 (EJJ34_18940) braR 3562644..3563357 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  EJJ34_RS18940 (EJJ34_18945) yvzJ 3563504..3563713 (+) 210 WP_003243327.1 lipoprotein -
  EJJ34_RS18945 (EJJ34_18950) yvcN 3563749..3564513 (-) 765 WP_009968228.1 arylamine N-acetyltransferase -
  EJJ34_RS18950 (EJJ34_18955) crh 3564514..3564771 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  EJJ34_RS18955 (EJJ34_18960) whiA 3564795..3565745 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  EJJ34_RS18960 (EJJ34_18965) mgfK 3565768..3566721 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  EJJ34_RS18965 (EJJ34_18970) rapZ 3566723..3567610 (-) 888 WP_003243903.1 RNase adapter RapZ -
  EJJ34_RS18970 (EJJ34_18975) rppI 3567635..3568111 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=289969 EJJ34_RS18935 WP_003244535.1 3562644..3563357(-) (braR) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=289969 EJJ34_RS18935 WP_003244535.1 3562644..3563357(-) (braR) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB O06978

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43


Multiple sequence alignment