Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DDT09_RS10950 Genome accession   NZ_CP029070
Coordinates   2228413..2229021 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223413..2234021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS10910 (DDT09_10910) - 2224434..2224940 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  DDT09_RS10915 (DDT09_10915) - 2225079..2225492 (+) 414 WP_007612169.1 hypothetical protein -
  DDT09_RS10920 (DDT09_10920) - 2225522..2225989 (-) 468 WP_061862316.1 YppG family protein -
  DDT09_RS10925 (DDT09_10925) - 2226175..2226357 (+) 183 WP_003153532.1 YppF family protein -
  DDT09_RS10930 (DDT09_10930) - 2226396..2226764 (-) 369 WP_061862317.1 YppE family protein -
  DDT09_RS10935 (DDT09_10935) - 2226810..2227055 (-) 246 WP_014418233.1 DUF5446 family protein -
  DDT09_RS10940 (DDT09_10940) sspM 2227261..2227365 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DDT09_RS10945 (DDT09_10945) - 2227409..2228371 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  DDT09_RS10950 (DDT09_10950) recU 2228413..2229021 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  DDT09_RS10955 (DDT09_10955) - 2229060..2231843 (+) 2784 WP_061862318.1 PBP1A family penicillin-binding protein -
  DDT09_RS10960 (DDT09_10960) - 2231921..2232412 (-) 492 WP_061862319.1 YpoC family protein -
  DDT09_RS10965 (DDT09_10965) nth 2232409..2233068 (-) 660 WP_007612187.1 endonuclease III -
  DDT09_RS10970 (DDT09_10970) dnaD 2233088..2233786 (-) 699 WP_061862320.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=289958 DDT09_RS10950 WP_003153521.1 2228413..2229021(+) (recU) [Bacillus amyloliquefaciens strain ALB69]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=289958 DDT09_RS10950 WP_003153521.1 2228413..2229021(+) (recU) [Bacillus amyloliquefaciens strain ALB69]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment