Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DDT09_RS08655 Genome accession   NZ_CP029070
Coordinates   1683786..1684685 (+) Length   299 a.a.
NCBI ID   WP_061862189.1    Uniprot ID   A0AAP5QIX4
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1678786..1689685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS08635 (DDT09_08635) - 1679477..1681180 (+) 1704 WP_061862188.1 hypothetical protein -
  DDT09_RS08640 (DDT09_08640) - 1681177..1681458 (+) 282 WP_061861456.1 FlhB-like flagellar biosynthesis protein -
  DDT09_RS08645 (DDT09_08645) sucC 1681633..1682790 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  DDT09_RS08650 (DDT09_08650) sucD 1682819..1683721 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  DDT09_RS08655 (DDT09_08655) dprA 1683786..1684685 (+) 900 WP_061862189.1 DNA-processing protein DprA Machinery gene
  DDT09_RS08660 (DDT09_08660) topA 1684867..1686942 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  DDT09_RS08665 (DDT09_08665) trmFO 1687007..1688314 (+) 1308 WP_061862190.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DDT09_RS08670 (DDT09_08670) xerC 1688384..1689301 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32850.04 Da        Isoelectric Point: 8.4593

>NTDB_id=289953 DDT09_RS08655 WP_061862189.1 1683786..1684685(+) (dprA) [Bacillus amyloliquefaciens strain ALB69]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPKAIFREIERKEPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=289953 DDT09_RS08655 WP_061862189.1 1683786..1684685(+) (dprA) [Bacillus amyloliquefaciens strain ALB69]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGAAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGAACCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGACTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment