Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DDT09_RS07655 Genome accession   NZ_CP029070
Coordinates   1446323..1446919 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441323..1451919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS07625 (DDT09_07625) - 1441537..1441992 (+) 456 WP_060561754.1 flavodoxin -
  DDT09_RS07630 (DDT09_07630) dapD 1442074..1442784 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DDT09_RS07635 (DDT09_07635) - 1442855..1443979 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  DDT09_RS07640 (DDT09_07640) - 1444040..1444285 (+) 246 WP_003154596.1 YkuS family protein -
  DDT09_RS07645 (DDT09_07645) - 1444319..1445125 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  DDT09_RS07650 (DDT09_07650) - 1445413..1445871 (+) 459 WP_014417617.1 TlpA disulfide reductase family protein -
  DDT09_RS07655 (DDT09_07655) rok 1446323..1446919 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  DDT09_RS07660 (DDT09_07660) - 1446940..1447932 (-) 993 WP_014417619.1 hypothetical protein -
  DDT09_RS07665 (DDT09_07665) - 1448078..1448680 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  DDT09_RS07670 (DDT09_07670) - 1448732..1449751 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  DDT09_RS07675 (DDT09_07675) glp 1449769..1451061 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  DDT09_RS07680 (DDT09_07680) mobB 1451022..1451543 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=289951 DDT09_RS07655 WP_003154591.1 1446323..1446919(+) (rok) [Bacillus amyloliquefaciens strain ALB69]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=289951 DDT09_RS07655 WP_003154591.1 1446323..1446919(+) (rok) [Bacillus amyloliquefaciens strain ALB69]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment