Detailed information    

insolico Bioinformatically predicted

Overview


Name   kre   Type   Regulator
Locus tag   DDT09_RS07555 Genome accession   NZ_CP029070
Coordinates   1430459..1430923 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 1425459..1435923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS07535 (DDT09_07535) - 1425939..1427760 (+) 1822 Protein_1419 PAS domain-containing protein -
  DDT09_RS07540 (DDT09_07540) - 1427785..1428954 (-) 1170 WP_007611083.1 aminotransferase A -
  DDT09_RS20310 - 1429155..1429316 (-) 162 WP_007409608.1 hypothetical protein -
  DDT09_RS07550 (DDT09_07550) cheV 1429505..1430416 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  DDT09_RS07555 (DDT09_07555) kre 1430459..1430923 (-) 465 WP_014417605.1 YkyB family protein Regulator
  DDT09_RS07560 (DDT09_07560) - 1431046..1432338 (-) 1293 WP_014417606.1 MFS transporter -
  DDT09_RS07565 (DDT09_07565) - 1432414..1432908 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  DDT09_RS07570 (DDT09_07570) - 1432983..1433846 (-) 864 WP_021493757.1 metallophosphoesterase -
  DDT09_RS07575 (DDT09_07575) fadH 1433990..1434754 (+) 765 WP_061862141.1 2,4-dienoyl-CoA reductase -
  DDT09_RS07580 (DDT09_07580) - 1434868..1435416 (+) 549 WP_014417610.1 hypothetical protein -

Sequence


Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=289950 DDT09_RS07555 WP_014417605.1 1430459..1430923(-) (kre) [Bacillus amyloliquefaciens strain ALB69]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=289950 DDT09_RS07555 WP_014417605.1 1430459..1430923(-) (kre) [Bacillus amyloliquefaciens strain ALB69]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTAACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains


Predicted by InterproScan.

(13-127)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929


Multiple sequence alignment