Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DDT09_RS05340 Genome accession   NZ_CP029070
Coordinates   1036081..1036659 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031081..1041659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS05320 (DDT09_05320) - 1031582..1032874 (-) 1293 WP_061862042.1 globin-coupled sensor protein -
  DDT09_RS05325 (DDT09_05325) - 1032997..1034520 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  DDT09_RS05330 (DDT09_05330) - 1034645..1035502 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  DDT09_RS05335 (DDT09_05335) - 1035533..1035766 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  DDT09_RS05340 (DDT09_05340) comK 1036081..1036659 (+) 579 WP_003155179.1 competence protein ComK Regulator
  DDT09_RS05345 (DDT09_05345) - 1036805..1037173 (+) 369 WP_012117235.1 iron chaperone -
  DDT09_RS05350 (DDT09_05350) - 1037200..1037571 (+) 372 WP_017417402.1 iron chaperone -
  DDT09_RS05355 (DDT09_05355) - 1037694..1038203 (+) 510 WP_061862043.1 MepB family protein -
  DDT09_RS05360 (DDT09_05360) - 1038432..1039142 (-) 711 WP_061862044.1 YrpD family protein -
  DDT09_RS05365 (DDT09_05365) - 1039338..1039607 (+) 270 WP_061862045.1 excalibur calcium-binding domain-containing protein -
  DDT09_RS05370 (DDT09_05370) - 1039640..1039957 (-) 318 WP_003155166.1 YbjQ family protein -
  DDT09_RS05375 (DDT09_05375) - 1039999..1041468 (-) 1470 WP_061862046.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=289939 DDT09_RS05340 WP_003155179.1 1036081..1036659(+) (comK) [Bacillus amyloliquefaciens strain ALB69]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=289939 DDT09_RS05340 WP_003155179.1 1036081..1036659(+) (comK) [Bacillus amyloliquefaciens strain ALB69]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment