Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DDT09_RS00250 Genome accession   NZ_CP029070
Coordinates   45957..46247 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40957..51247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS00210 (DDT09_00210) darA 40974..41303 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  DDT09_RS00215 (DDT09_00215) - 41316..41756 (+) 441 WP_061861759.1 DUF327 family protein -
  DDT09_RS00220 (DDT09_00220) holB 41768..42757 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  DDT09_RS00225 (DDT09_00225) ricT 42760..43587 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DDT09_RS00230 (DDT09_00230) yabA 43602..43961 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  DDT09_RS00235 (DDT09_00235) - 44022..44765 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DDT09_RS00240 (DDT09_00240) - 44752..45051 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  DDT09_RS00245 (DDT09_00245) rsmI 45026..45907 (+) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DDT09_RS00250 (DDT09_00250) abrB 45957..46247 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DDT09_RS00255 (DDT09_00255) metG 46730..48721 (+) 1992 WP_061861760.1 methionine--tRNA ligase -
  DDT09_RS00260 (DDT09_00260) - 48802..49569 (+) 768 WP_017419495.1 TatD family hydrolase -
  DDT09_RS00265 (DDT09_00265) - 49704..51029 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=289924 DDT09_RS00250 WP_169510469.1 45957..46247(-) (abrB) [Bacillus amyloliquefaciens strain ALB69]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=289924 DDT09_RS00250 WP_169510469.1 45957..46247(-) (abrB) [Bacillus amyloliquefaciens strain ALB69]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment