Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   BAALB65_RS20365 Genome accession   NZ_CP029069
Coordinates   397966..398130 (+) Length   54 a.a.
NCBI ID   WP_012116773.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 392966..403130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS20360 srfAB 394911..397901 (+) 2991 Protein_387 surfactin non-ribosomal peptide synthetase SrfAB -
  BAALB65_RS20365 comS 397966..398130 (+) 165 WP_012116773.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6153.16 Da        Isoelectric Point: 12.0559

>NTDB_id=289921 BAALB65_RS20365 WP_012116773.1 397966..398130(+) (comS) [Bacillus amyloliquefaciens strain ALB65]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=289921 BAALB65_RS20365 WP_012116773.1 397966..398130(+) (comS) [Bacillus amyloliquefaciens strain ALB65]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGGAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment