Detailed information NTG0289883

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: EJJ34_RS06375
• Genome accession: NZ_CP034484
• Coordinates: 1222133..1223050 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1217133..1228050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJJ34_RS06360 (EJJ34_06360)	trpS	1217713..1218705 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
EJJ34_RS06365 (EJJ34_06365)	oppA	1219449..1221086 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
EJJ34_RS06370 (EJJ34_06370)	oppB	1221194..1222129 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
EJJ34_RS06375 (EJJ34_06375)	amiD	1222133..1223050 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
EJJ34_RS06380 (EJJ34_06380)	oppD	1223055..1224131 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
EJJ34_RS06385 (EJJ34_06385)	oppF	1224133..1225050 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
EJJ34_RS06390 (EJJ34_06390)	yjbB	1225157..1226374 (+)	1218	WP_010886478.1	MFS transporter	-
EJJ34_RS06395 (EJJ34_06395)	yjbC	1226538..1227116 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
EJJ34_RS06400 (EJJ34_06400)	spx	1227297..1227692 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=289883 EJJ34_RS06375 WP_003232954.1 1222133..1223050(+) (amiD) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=289883 EJJ34_RS06375 WP_003232954.1 1222133..1223050(+) (amiD) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364