Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAALB65_RS02145 Genome accession   NZ_CP029069
Coordinates   380939..381376 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 375939..386376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS02120 (BAALB65_02120) - 376959..378095 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  BAALB65_RS02125 (BAALB65_02125) - 378110..378544 (+) 435 WP_014416871.1 RDD family protein -
  BAALB65_RS02130 (BAALB65_02130) - 378616..378939 (+) 324 WP_007409357.1 YckD family protein -
  BAALB65_RS02135 (BAALB65_02135) - 379043..380479 (+) 1437 WP_109566680.1 family 1 glycosylhydrolase -
  BAALB65_RS02140 (BAALB65_02140) nin/comJ 380520..380918 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  BAALB65_RS02145 (BAALB65_02145) nucA/comI 380939..381376 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAALB65_RS02150 (BAALB65_02150) hxlB 381707..382264 (-) 558 WP_109566681.1 6-phospho-3-hexuloisomerase -
  BAALB65_RS02155 (BAALB65_02155) hxlA 382261..382896 (-) 636 WP_109566682.1 3-hexulose-6-phosphate synthase -
  BAALB65_RS02160 (BAALB65_02160) - 383128..383490 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=289852 BAALB65_RS02145 WP_003156588.1 380939..381376(-) (nucA/comI) [Bacillus amyloliquefaciens strain ALB65]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=289852 BAALB65_RS02145 WP_003156588.1 380939..381376(-) (nucA/comI) [Bacillus amyloliquefaciens strain ALB65]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment