Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EJF26_RS09670 Genome accession   NZ_CP034442
Coordinates   1909984..1912206 (+) Length   740 a.a.
NCBI ID   WP_025168946.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904984..1917206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS09645 - 1905972..1906754 (-) 783 WP_000613944.1 DUF4037 domain-containing protein -
  EJF26_RS09650 - 1906884..1907543 (-) 660 WP_000443884.1 amino acid ABC transporter permease -
  EJF26_RS09655 - 1907553..1908230 (-) 678 WP_000131126.1 amino acid ABC transporter permease -
  EJF26_RS09660 - 1908243..1909037 (-) 795 WP_000727690.1 transporter substrate-binding domain-containing protein -
  EJF26_RS09665 - 1909048..1909806 (-) 759 WP_001229576.1 amino acid ABC transporter ATP-binding protein -
  EJF26_RS09670 recJ 1909984..1912206 (+) 2223 WP_025168946.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EJF26_RS09675 - 1912379..1914040 (+) 1662 WP_000065617.1 ribonuclease J -
  EJF26_RS09680 - 1914109..1914888 (+) 780 WP_000290041.1 alpha/beta hydrolase family protein -
  EJF26_RS09685 - 1915004..1916227 (+) 1224 WP_000286590.1 aminoacyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82516.98 Da        Isoelectric Point: 4.3304

>NTDB_id=289831 EJF26_RS09670 WP_025168946.1 1909984..1912206(+) (recJ) [Streptococcus oralis subsp. dentisani strain F0392]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVKRIRQAIEE
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPDRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
IMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADASGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWVTEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAALPEGVPVLDFAGEVPDLTNSEAVVVKTIPEDITLLKTVFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESRIYQNLKQTVKD
QEMMALGTVQEMYDFLMAEN

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=289831 EJF26_RS09670 WP_025168946.1 1909984..1912206(+) (recJ) [Streptococcus oralis subsp. dentisani strain F0392]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCCGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGGATGAAGAAAGTCTAAAGAAGTTTTTAGAACCTT
CTTTAGAGGACTTACATGACCCCTATCTGCTTCATGATATGGACAAGGCAGTGAAAAGGATTCGTCAGGCCATTGAAGAA
GGAGAAAACATTCTCATCTATGGAGACTACGATGCGGATGGCATGACTTCGGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGCGCCGAGTGCCGTGTTTACCTGCCCGATCGCTTTACCGATGGCTATGGACCAAATGCCAGTGTTTATAAATATT
TTATCGAGCAAGAGGGCATTTCCTTGATTGTGACAGTGGATAATGGGGTTGCTGGCCATGAAGCCATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACCGACCACCATTCTATGCCGGAAACCCTTCCTGATGCCTATGCGATTGTTCACCC
TGAACATCCAGATGCGGACTATCCCTTCAAACAGTTAGCTGGTTGCGGAGTGGCCTTTAAGCTGGCTTGTGCCCTTTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTCGCTATCGGTACCATTGCAGATATGGTGAGCTTGACAGATGAAAACCGT
ATCATGGTTCAATATGGTCTGGAAATGCTGGGACATACTCAGCGCATTGGCCTGCAAGAAATGCTGGACATGGCTGGGAT
TGCTGCGAATGAAGTGACAGAAGAAACGGTTGGATTCCAGATTGCCCCTCGTTTAAATGCCTTAGGGCGATTGGATGATC
CCAACCCTGCCATTGATTTGCTGACTGGATTTGACGACGAGGAAGCGCATGAGATTGCCCTCATGATTCACCAGAAAAAT
GAAGAACGTAAGGAAATCGTCCAATCAATCTATGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGGGTTCTGGGTATCGTAGCTGGGCGCTTGCTAGAGGAATTGGGGCAGACAGTTATCG
TTCTTAATATAGAAGATGGTCGTGCCAAGGGTAGTGCTCGTAGTGTGGAAGCAGTCGATATTTTTGAAGCTCTGGATCCT
CATCGAGATCTCTTCATCGCATTCGGTGGCCATGCTGGTGCAGCAGGAATGACGCTGGAAGTTGAGAAGCTCTCAGATTT
ATCTCAGGTTTTGGAAGACTATGTCCGTGAAAAAGGTGCAGATGCTAGTGGTAAGAACAAGTTAAATCTAGATGAAGAGC
TAGATTTGGAGACTCTTAGCTTGGAAACGGTTAAAAGCTTTGAACGCTTGGCACCTTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCATGTCGAAAGTGCCCGTACCATGGGAGCAGGCAATGCCCACCTCAAACTAAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGTAACAGAGTTTGCTCAAACAAAAAATCTTG
AATTGGCAGTCACCTTGTCTGTCAATCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGCGTTCAACTCTTTAACATTCGTGGGAAGAACGCAGCCTTGCCAGAAGGGGTTCCAGTCTTGGACTTCGCTGGAGAAGT
GCCGGATTTGACGAATAGTGAGGCGGTTGTTGTAAAAACCATTCCTGAGGATATTACCTTGCTTAAGACCGTTTTTCAGG
AACAAAATTTCTCTGCAGTCTATTTCAAAAACGACATTGACAAGGCCTACTATCTGACAGGTTATGGAACTAGAGAACAG
TTTGCAAAATTGTACAAGACTATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTTAAGGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATTCAAGTCTTTGAAGAACTGGGCTTTGTGACAATCAAAGATGGTGTCA
TGACAGTCAATAAGGAAGCGCCAAAGCGAGAGATAGGAGAAAGTCGGATTTACCAAAATCTCAAACAAACCGTTAAAGAT
CAAGAAATGATGGCGCTGGGTACGGTGCAGGAAATGTATGATTTTTTAATGGCAGAAAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-735)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.794

99.595

0.954
  recJ Bacillus subtilis subsp. subtilis str. 168

37.047

100

0.386