Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   EJF26_RS09085 Genome accession   NZ_CP034442
Coordinates   1780806..1783172 (-) Length   788 a.a.
NCBI ID   WP_000454466.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775806..1788172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS09060 liaF 1776389..1777087 (+) 699 WP_000714486.1 cell wall-active antibiotics response protein LiaF -
  EJF26_RS09065 - 1777084..1778082 (+) 999 WP_000744934.1 sensor histidine kinase -
  EJF26_RS09070 vraR 1778093..1778725 (+) 633 WP_000698446.1 response regulator transcription factor Regulator
  EJF26_RS09075 - 1778726..1779382 (+) 657 WP_000050042.1 DNA alkylation repair protein -
  EJF26_RS09080 tig 1779475..1780758 (+) 1284 WP_000116512.1 trigger factor -
  EJF26_RS09085 recD/recD2/recDB 1780806..1783172 (-) 2367 WP_000454466.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EJF26_RS09090 lepB 1783321..1783935 (-) 615 WP_001105831.1 signal peptidase I -
  EJF26_RS09095 rnhC 1783939..1784820 (-) 882 WP_000146904.1 ribonuclease HIII -
  EJF26_RS09100 zapA 1784907..1785209 (+) 303 WP_000002029.1 cell division protein ZapA -
  EJF26_RS09105 - 1785206..1785754 (+) 549 WP_000623544.1 CvpA family protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88469.47 Da        Isoelectric Point: 4.6365

>NTDB_id=289825 EJF26_RS09085 WP_000454466.1 1780806..1783172(-) (recD/recD2/recDB) [Streptococcus oralis subsp. dentisani strain F0392]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMTDVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTKKGLVKYFSSSHFKGIGLKTAQKIVDCYGENTIDEILEHPEKLESISGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMKA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKNQDLETIQKH
IASVEEELGIEYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGFDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKPDRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFKDLVDSTDQTSPAPSKTKNQEDSPLSYILTEENWSNIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=289825 EJF26_RS09085 WP_000454466.1 1780806..1783172(-) (recD/recD2/recDB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGGAAGTTTATTTTTCAGGCACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACTATGACTGACGTGATTGAAGGGG
AAGACTACACCTTTTGGGGACAAATCGTTCAACACTCCAAGTACGGAGAACAACTGCAAATCAGCCGTTATGAACGGGCA
AAACCAACTAAAAAAGGGCTAGTTAAGTACTTTTCGAGTAGCCACTTCAAGGGAATTGGTCTCAAAACGGCTCAAAAAAT
CGTGGATTGCTATGGTGAAAATACCATTGACGAAATTCTGGAGCATCCTGAAAAGCTAGAAAGCATCTCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTCGTCTCTACACTTCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCCAACTAC
GGCATTCCTAATAAATTGGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACGCTGGATATTGTCGAAAACTATCCCTA
TCAACTGGTTGAGGATATCAAGGGTTTGGGTTTTACCATTGCTGACCAATTAGCCGCCGAACTAGGCATCGAAAGCCAAG
CTCCCGAGCGCTTCCGTGCTGGCCTTGTCCACAGTCTCTTTCAAGGTTGTATGGATACGGGTGATACCTATATGAAAGCC
CGTGATTTGCTAGAACAGACCCTGACTCTCCTCGAGTCTTCCCGTCCCGTGGAACTGGATCCCAGCCAAGTAGCCCAAGA
ACTCTCCTACCTCATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGACAATAGCCTCTTTTTCGCCGAGG
AAGGTATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAAAATCAGGATTTAGAAACCATTCAAAAGCAT
ATCGCTAGTGTCGAGGAGGAACTGGGTATTGAGTATGATAGCATCCAAAAACAGGCTATCTGCGATGCTATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACTGGTAAGACGACTGTTATCAATGGAATTATCGCTGTCTATGCCCTCTTAG
AGGGATTTGACCTCAGAAAAAAAAGCAACCTGCCTATCCTTCTAGCAGCTCCAACTGGTCGAGCAGCTCGGCGCATGAAT
GAATTAACAGGTTTGCCTAGCGCGACCATTCACCGCCATTTGGGGATGACGGGAGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCCGACTTCATCATCGTAGATGAGTTTTCTATGGTGGACACTTGGCTAGCCAACCAACTTTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTGGGCGATAGCGACCAGCTACCTTCTGTTAGTCCTGGACAAGTCCTGGCTGAT
CTGCTCCAGATACCCCTGATTCCGCAGACTCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACCTT
GGCTAGTCAGATTCGACAAGGCATCTTGCCAGCCGACTTTACCCAGAAAAAACCTGACCGTTCCTACTTTGAAATCGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATTCTTGGCGCAGCCCTCAGAAGTGGCATTCCGGCTCGTGATATTCAGGTG
CTTGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATTAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTTAGCTTTGAAGCAACTCAGTGCCACTATCGAACAGGGGACAAGGTTATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAATGGAGACCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCTAAACAAGACGAGATT
GTCATTGATTTTGACGGCAATGAGGTCGTCTACCCACGTAACGAATGGTACAAGATTCGCCTAGCCTATGCTATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAACGCAATC
TCATCTATACGGCTATTACACGGGCTAAGAGCAAGCTCATCCTACTAGGCGAATTACAGGCCTTTGACTATGCAGTCAAA
CATATCGGAACTGCCCGTAAGACCTATCTGATTGAACGCTTTAAAGATCTGGTCGATTCTACCGACCAAACCAGCCCAGC
TCCTAGCAAAACGAAAAATCAAGAGGATTCTCCTCTATCCTACATCCTCACCGAGGAAAACTGGTCTAATATCCCCGCCA
TGATTGGAATTACCGACGCAGACCTCAAAGAAATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-517)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.854

95.812

0.401