Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DDJ96_RS03955 Genome accession   NZ_CP029066
Coordinates   836542..838221 (+) Length   559 a.a.
NCBI ID   WP_010735994.1    Uniprot ID   A0A1V2UJY5
Organism   Enterococcus mundtii strain Pe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831542..843221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDJ96_RS03925 (DDJ96_03950) - 831841..832695 (+) 855 WP_010736000.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  DDJ96_RS03930 (DDJ96_03955) xseA 832692..834032 (+) 1341 WP_010735999.1 exodeoxyribonuclease VII large subunit -
  DDJ96_RS03935 (DDJ96_03960) - 834034..834261 (+) 228 WP_010735998.1 exodeoxyribonuclease VII small subunit -
  DDJ96_RS03940 (DDJ96_03965) - 834258..835145 (+) 888 WP_023519346.1 polyprenyl synthetase family protein -
  DDJ96_RS03945 (DDJ96_03970) - 835154..835975 (+) 822 WP_010735996.1 TlyA family RNA methyltransferase -
  DDJ96_RS03950 (DDJ96_03975) - 836075..836524 (+) 450 WP_010735995.1 arginine repressor -
  DDJ96_RS03955 (DDJ96_03980) recN 836542..838221 (+) 1680 WP_010735994.1 DNA repair protein RecN Machinery gene
  DDJ96_RS03960 (DDJ96_03985) - 839076..840533 (+) 1458 WP_023519348.1 hypothetical protein -
  DDJ96_RS03965 (DDJ96_03990) - 840588..841202 (+) 615 WP_137072063.1 hypothetical protein -
  DDJ96_RS03970 (DDJ96_03995) - 841390..842592 (+) 1203 WP_137072065.1 hypothetical protein -
  DDJ96_RS03975 (DDJ96_04000) - 842579..843178 (+) 600 WP_137072067.1 hypothetical protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62836.90 Da        Isoelectric Point: 4.4456

>NTDB_id=289820 DDJ96_RS03955 WP_010735994.1 836542..838221(+) (recN) [Enterococcus mundtii strain Pe103]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPKQEGFEALM
EELGIESDGSNLIVRRDMSLAGKNVCRVNGHIVTLANLRRVGSYLVDIQGQNEHQELLQPESHLVLLDRFGDSTFQQKKR
AYQEAYQAYRELERKVRKIQQNEKNYVQRIDMLNFQQEEIAAAQLEVGEEEKLREERDKLSNYQKIVDGLATAYGALSEG
EQSSLDGVGMAVSEIQSIAHLDSEYEAIFDNIQSAYYLLQDAVGDMSRQIDLLELDENRLEEVTQRMETIRQLKRKYGDS
VEAILAYYEEITEELDSSDFTEGQLDKMKNELTQKEEWAFQCAEELHQARKAIASDLEQSILRELKSLYMENTEFEVRFS
TQANGRLDEQGFDIVEFYITTNPGEPLKPLVKVASGGELSRVLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
LKISKYSQVLCITHLPQVAAVADYQYYIVKEVVGGRTQTSVAELAAAERENEIARMLAGSEITPLTIEHAKELLRLAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=289820 DDJ96_RS03955 WP_010735994.1 836542..838221(+) (recN) [Enterococcus mundtii strain Pe103]
ATGCTACAAGAAATCAGTATCACCAATTTTGCGATTATTCCTGAATTGCGTTTGTCGTTTCATGAAGGAATGACAGCATT
AACAGGAGAAACCGGAGCCGGTAAGTCAATTATTATTGATGCTTTGGGCTTATTAGCAGGTGGTCGCGGATCAAGTGATT
ATATTCGTCAAGGTGCCGATAAATGTATTCTGGAAGGGTTGTTTGAATGGCCTAAACAAGAAGGTTTTGAAGCTTTGATG
GAAGAGTTAGGGATTGAGTCCGATGGTTCAAATCTGATCGTCCGTCGAGATATGTCTTTAGCAGGTAAGAATGTTTGTCG
AGTGAATGGACATATCGTGACATTAGCGAATTTGCGACGCGTAGGTAGTTATTTAGTGGATATCCAAGGTCAAAATGAAC
ATCAGGAACTATTACAACCTGAATCACATCTTGTGTTACTTGATCGTTTTGGAGACTCGACATTCCAACAGAAAAAAAGA
GCGTACCAAGAAGCCTATCAAGCGTATCGTGAACTTGAAAGAAAAGTACGTAAGATCCAACAAAACGAAAAAAACTATGT
CCAACGTATCGATATGTTGAATTTCCAACAAGAAGAAATCGCAGCCGCCCAATTAGAAGTTGGTGAAGAAGAAAAACTTC
GAGAAGAGCGCGATAAATTAAGTAATTATCAAAAAATCGTCGATGGTTTAGCTACTGCTTATGGGGCGCTCAGTGAAGGT
GAACAAAGTAGTCTTGATGGGGTGGGAATGGCTGTTTCCGAGATCCAAAGTATTGCCCACCTTGATTCAGAGTATGAAGC
AATTTTTGATAATATCCAGAGTGCCTATTATTTATTGCAAGATGCAGTAGGGGACATGAGCAGGCAAATCGATCTGCTTG
AACTGGATGAGAATCGTTTGGAAGAAGTGACGCAACGCATGGAAACGATTCGCCAATTGAAGCGTAAATATGGCGATTCA
GTTGAAGCTATCTTAGCCTACTATGAAGAAATCACAGAAGAATTGGATTCATCTGATTTTACAGAAGGTCAACTTGATAA
AATGAAGAATGAACTGACTCAAAAAGAAGAGTGGGCGTTTCAATGTGCAGAAGAACTCCATCAAGCAAGAAAAGCGATCG
CCAGTGACTTAGAACAGTCGATTCTGCGTGAATTAAAGAGTCTTTATATGGAAAACACCGAATTTGAAGTTCGTTTTTCA
ACGCAAGCAAATGGACGCTTAGATGAGCAAGGTTTTGATATTGTCGAATTTTATATCACGACAAATCCTGGAGAACCATT
GAAGCCACTAGTCAAGGTAGCATCAGGTGGGGAATTGTCACGAGTATTACTTGCTCTGAAAACCATTTTTTCTTCGGAAC
AAGGTGTGACTAGTATCATTTTTGACGAAGTTGATACTGGTGTTAGTGGCAGAGTGGCACAAGCCATTGCGGATAAAATA
TTGAAAATATCCAAATATTCCCAAGTACTTTGTATCACGCATCTTCCTCAAGTGGCGGCGGTAGCGGATTATCAATATTA
CATTGTAAAAGAAGTCGTCGGCGGAAGAACACAAACATCCGTCGCCGAATTAGCTGCAGCTGAAAGAGAAAATGAAATCG
CACGAATGTTAGCGGGAAGTGAAATCACGCCTTTAACGATCGAACACGCCAAAGAGTTGTTACGTTTGGCGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2UJY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.526

100

0.515

Multiple sequence alignment