Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BTJ40_RS22870 Genome accession   NZ_CP029064
Coordinates   4919781..4920731 (-) Length   316 a.a.
NCBI ID   WP_238152234.1    Uniprot ID   -
Organism   Microbulbifer sp. A4B17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4914781..4925731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTJ40_RS21535 (BTJ40_21535) - 4915118..4915552 (+) 435 WP_108735008.1 hypothetical protein -
  BTJ40_RS21540 (BTJ40_21540) trmB 4915625..4916413 (-) 789 WP_108735009.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BTJ40_RS21545 (BTJ40_21545) - 4916498..4916875 (-) 378 WP_108735010.1 DUF423 domain-containing protein -
  BTJ40_RS21550 (BTJ40_21550) rpoH 4916984..4917838 (-) 855 WP_108735011.1 RNA polymerase sigma factor RpoH -
  BTJ40_RS21555 (BTJ40_21555) ftsX 4918061..4919077 (-) 1017 WP_108735012.1 permease-like cell division protein FtsX -
  BTJ40_RS21560 (BTJ40_21560) ftsE 4919058..4919744 (-) 687 WP_108735013.1 cell division ATP-binding protein FtsE -
  BTJ40_RS22870 pilA 4919781..4920731 (-) 951 WP_238152234.1 signal recognition particle-docking protein FtsY Machinery gene
  BTJ40_RS21570 (BTJ40_21570) rsmD 4921198..4921788 (+) 591 WP_108735015.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BTJ40_RS21575 (BTJ40_21575) coaD 4921872..4922348 (+) 477 WP_108735016.1 pantetheine-phosphate adenylyltransferase -
  BTJ40_RS21580 (BTJ40_21580) ggt 4922411..4924135 (+) 1725 WP_108735017.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34084.94 Da        Isoelectric Point: 5.7169

>NTDB_id=289803 BTJ40_RS22870 WP_238152234.1 4919781..4920731(-) (pilA) [Microbulbifer sp. A4B17]
MKPEAKKKEGFFARIRRGLSRTSNQFVEGMGNLFLGAKEIDDDLLEELETQLLMADVGVEATSEIVERLTERVSRRELAD
GDALYKALQQELADLLDSVDAPLEIDISKKPYVILVVGVNGVGKTTTIGKLAHRFLGEGKSVMLAAGDTFRAAAVEQLQV
WGQRHDVPVVAQHTGADSASVIFDAVQSAQARGVDVVIADTAGRLHTKSNLMEELSKVRRVMGKLDPSAPHEVLLVLDAG
TGQNAINQASQFREAAGVTGLVLTKLDGTAKGGVIFALARRFGIPVRFIGVGEQAEDLQPFHAREFVSALFGRDKA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=289803 BTJ40_RS22870 WP_238152234.1 4919781..4920731(-) (pilA) [Microbulbifer sp. A4B17]
CTGAAGCCGGAAGCGAAAAAGAAAGAGGGCTTCTTTGCGCGTATTCGCCGTGGCCTCAGCCGCACCAGCAACCAGTTTGT
TGAGGGGATGGGCAACCTGTTCCTCGGTGCCAAGGAGATCGATGACGATCTGCTGGAAGAACTCGAGACACAGCTGTTAA
TGGCAGATGTGGGGGTTGAAGCCACTAGCGAGATCGTTGAGCGCCTGACCGAGCGGGTATCCCGCAGGGAGCTGGCCGAC
GGTGATGCGCTTTACAAAGCGCTGCAGCAGGAACTGGCCGACTTACTCGATAGTGTTGATGCTCCCCTGGAAATTGATAT
CAGCAAAAAGCCTTACGTCATCCTGGTAGTGGGCGTAAACGGTGTGGGTAAAACCACGACAATCGGCAAGCTGGCCCACC
GCTTCCTCGGTGAGGGTAAGTCGGTGATGTTGGCAGCCGGTGATACATTCCGTGCCGCAGCAGTTGAACAGCTACAGGTT
TGGGGGCAGCGTCACGATGTACCGGTTGTAGCGCAGCATACTGGCGCCGATAGTGCGTCAGTCATTTTTGATGCGGTTCA
GTCTGCTCAGGCGCGCGGTGTTGATGTGGTGATTGCCGATACCGCCGGGCGCCTGCACACGAAATCCAACTTGATGGAAG
AACTGTCCAAAGTACGCCGGGTGATGGGCAAACTGGACCCCAGCGCCCCCCACGAAGTGCTGTTGGTACTGGATGCTGGC
ACTGGCCAAAATGCGATTAACCAGGCCTCTCAGTTCCGCGAGGCGGCCGGTGTTACCGGCTTGGTGCTGACCAAATTGGA
TGGTACTGCCAAAGGCGGCGTCATCTTTGCTCTGGCCCGTCGTTTCGGCATCCCGGTGCGTTTTATCGGTGTGGGTGAGC
AGGCGGAAGATCTACAGCCATTCCACGCTCGTGAGTTCGTATCCGCCCTGTTTGGCCGCGACAAGGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(112-311)

SRP54-type protein, helical bundle domain (SRP54_N)

(28-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.947

96.203

0.519

Multiple sequence alignment