Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EJF26_RS07415 Genome accession   NZ_CP034442
Coordinates   1480270..1481040 (+) Length   256 a.a.
NCBI ID   WP_000616134.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475270..1486040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS07390 abpA 1475798..1476433 (+) 636 WP_000757007.1 amylase-binding adhesin AbpA -
  EJF26_RS07395 srtB 1476519..1477355 (+) 837 WP_000091217.1 class B sortase, LPKTxAVK-specific -
  EJF26_RS07400 - 1477479..1477916 (+) 438 WP_000076486.1 CoA-binding protein -
  EJF26_RS07405 - 1477943..1478953 (-) 1011 WP_000009150.1 YeiH family protein -
  EJF26_RS07410 - 1479104..1480273 (+) 1170 WP_000366373.1 pyridoxal phosphate-dependent aminotransferase -
  EJF26_RS07415 recO 1480270..1481040 (+) 771 WP_000616134.1 DNA repair protein RecO Machinery gene
  EJF26_RS07420 plsX 1481037..1482029 (+) 993 WP_000717469.1 phosphate acyltransferase PlsX -
  EJF26_RS07425 - 1482034..1482270 (+) 237 WP_000136440.1 acyl carrier protein -
  EJF26_RS07430 - 1482600..1482743 (+) 144 WP_000180834.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EJF26_RS07435 - 1482759..1482917 (+) 159 WP_001056955.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EJF26_RS09850 - 1483314..1483469 (+) 156 WP_000732133.1 hypothetical protein -
  EJF26_RS07440 - 1483508..1483720 (+) 213 WP_001016295.1 hypothetical protein -
  EJF26_RS07445 - 1483801..1483989 (+) 189 WP_000808741.1 hypothetical protein -
  EJF26_RS07450 - 1484014..1484223 (+) 210 WP_000869802.1 hypothetical protein -
  EJF26_RS10320 - 1484548..1484742 (+) 195 WP_001033679.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.20 Da        Isoelectric Point: 5.0210

>NTDB_id=289795 EJF26_RS07415 WP_000616134.1 1480270..1481040(+) (recO) [Streptococcus oralis subsp. dentisani strain F0392]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=289795 EJF26_RS07415 WP_000616134.1 1480270..1481040(+) (recO) [Streptococcus oralis subsp. dentisani strain F0392]
ATGATCCAGTCTATCACGAGTCAAGGTCTCGTACTCTACAATCGTAACTTTCGGGAGGATGATAAGCTAGTCAAAATCTT
CACCGAGCAGGCTGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAATCTAAACTAGCTCCGGTTATTCAGCCCTTGG
TACTAGCTCGGTTTCTCTTGCGAATCAATGATGACGGCCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCTTATGCAACCTATGTGGCTGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCCTAGATTATCAGGTCTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTTAAATATGGAGCCTGTCTTTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACTATTTCGCTCAAGCCTG
AAATCAAGCAAGACTTGCGCAAGTTTATAGATCAAATCTACGAAGAGTATGTTGGAATTCACTTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.875

100

0.969