Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FORC81_RS07745 Genome accession   NZ_CP029057
Coordinates   1560039..1560668 (-) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_081     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555039..1565668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC81_RS07730 (FORC81_1565) helD 1555281..1557335 (-) 2055 WP_001295354.1 DNA helicase IV -
  FORC81_RS07735 (FORC81_1566) yccF 1557458..1557904 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FORC81_RS07740 (FORC81_1567) yccS 1557914..1560076 (+) 2163 WP_000875061.1 YccS family putative transporter -
  FORC81_RS07745 (FORC81_1568) sxy/tfoX 1560039..1560668 (-) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FORC81_RS07750 (FORC81_1569) sulA 1560887..1561396 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FORC81_RS07755 (FORC81_1570) ompA 1561753..1562793 (+) 1041 WP_001400178.1 porin OmpA -
  FORC81_RS07760 (FORC81_1571) matP 1562869..1563321 (-) 453 WP_134162518.1 macrodomain Ter protein MatP -
  FORC81_RS07765 (FORC81_1572) ycbZ 1563507..1565267 (+) 1761 WP_001614499.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=289762 FORC81_RS07745 WP_000839131.1 1560039..1560668(-) (sxy/tfoX) [Escherichia coli strain FORC_081]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=289762 FORC81_RS07745 WP_000839131.1 1560039..1560668(-) (sxy/tfoX) [Escherichia coli strain FORC_081]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment