Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EJF26_RS05355 Genome accession   NZ_CP034442
Coordinates   1061521..1062570 (-) Length   349 a.a.
NCBI ID   WP_000653792.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1056521..1067570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05325 - 1057655..1057954 (-) 300 WP_001041394.1 YlxQ-related RNA-binding protein -
  EJF26_RS05330 rnpM 1057947..1058240 (-) 294 WP_000857560.1 RNase P modulator RnpM -
  EJF26_RS05335 nusA 1058262..1059398 (-) 1137 WP_000032279.1 transcription termination factor NusA -
  EJF26_RS05340 rimP 1059441..1059920 (-) 480 WP_000379537.1 ribosome maturation factor RimP -
  EJF26_RS05345 trmB 1060047..1060682 (-) 636 WP_001266091.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EJF26_RS05350 ccrZ 1060679..1061473 (-) 795 WP_000363012.1 cell cycle regulator CcrZ -
  EJF26_RS05355 pptB 1061521..1062570 (-) 1050 WP_000653792.1 ABC transporter permease Regulator
  EJF26_RS05360 pptA 1062567..1063298 (-) 732 WP_000889931.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS05365 - 1063366..1063776 (+) 411 WP_000063760.1 HIT family protein -
  EJF26_RS05370 - 1063786..1064064 (+) 279 WP_000777766.1 hypothetical protein -
  EJF26_RS05375 - 1064128..1064787 (+) 660 WP_000865429.1 hypothetical protein -
  EJF26_RS05380 dnaJ 1064867..1066003 (-) 1137 WP_001066320.1 molecular chaperone DnaJ -
  EJF26_RS05385 - 1066155..1066787 (-) 633 WP_000756351.1 DJ-1/PfpI family protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40386.25 Da        Isoelectric Point: 9.9382

>NTDB_id=289762 EJF26_RS05355 WP_000653792.1 1061521..1062570(-) (pptB) [Streptococcus oralis subsp. dentisani strain F0392]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQNFPENHWPILLFLGIVSALLLAWGGIATYMEV
PDKLFLLVSEEEVTSHLKGQTVRSVVFWLFVQTLFLLLFAPLFLAMGYGLPVFLIYVLLLGAAKYLVFRQKSSKFFTENR
LDWDYVISQESKRKQVLLRFFALFTQVKGVSNSVKRRSYLDFILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVVGAGSAVLLLELLVGAVVFQE
KIALLALVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=289762 EJF26_RS05355 WP_000653792.1 1061521..1062570(-) (pptB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAGACTTGTTTTTAAAGCGAAAGCAGGCTTTTCGTAAGGAGTGTGTCGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTGGTTCTCATCGGTTTTCTAGCCTACCAGTATAGTCAACTTTTGCAAAATTTTCCTGAAAATC
ACTGGCCTATTCTTTTGTTTTTGGGGATTGTCTCTGCTTTGCTTTTAGCTTGGGGAGGAATCGCAACCTACATGGAAGTA
CCTGACAAACTCTTTCTCTTAGTCAGTGAAGAGGAGGTTACGTCCCACCTCAAAGGGCAGACAGTGCGCTCAGTAGTCTT
TTGGCTCTTTGTCCAGACCCTTTTCTTACTTTTATTTGCGCCCTTATTTTTAGCCATGGGCTATGGCTTGCCAGTCTTTC
TCATCTATGTGCTTTTATTGGGAGCAGCGAAGTACCTAGTATTTCGCCAAAAATCCAGTAAATTTTTTACAGAGAATAGG
CTTGACTGGGACTATGTGATCTCCCAAGAAAGCAAGCGCAAGCAAGTTTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCTCTTATCTGGATTTTATCCTAAAAGCAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTTCGTTCTTACCTGCGAAATGGAGACCTCTTTGCCCTTAGTCTACGTCTGCTCTTGCTTTCT
TTGTTAGCGCAGGTCTTTATCGAGCAAGCTTGGATTGCGACGGCAGTAGTGGTTCTATTTAACTACCTCTTGCTCTTTCA
GTTACTGGCCCTCTATCATGCCTTTGACTACCAGTACTTGACCCAGCTCTTTCCACTAGAAAAAGGGGAGAAAGAGAAGG
GATTGAAACAGATTGTAGTCGGTGCGGGAAGTGCAGTTCTTTTGTTAGAATTGCTGGTCGGAGCAGTGGTTTTTCAAGAA
AAAATAGCCTTGTTGGCTCTTGTAGGGGCTAGTCTCTTCCTACAATTGTTTTATTTACCTTACCAACTGAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.143

100

0.473

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464


Multiple sequence alignment