Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FORC84_RS07525 Genome accession   NZ_CP029054
Coordinates   1454942..1455259 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain FORC_084     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449942..1460259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC84_RS07505 (FORC84_1492) ctsE 1450811..1452370 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  FORC84_RS07510 (FORC84_1493) ctsX 1452360..1452947 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FORC84_RS07515 (FORC84_1494) ctsP 1452951..1453559 (-) 609 WP_052789524.1 ATP-binding protein Machinery gene
  FORC84_RS07520 (FORC84_1495) ctsD 1453552..1454970 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FORC84_RS07525 (FORC84_1496) ctsR 1454942..1455259 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  FORC84_RS07530 (FORC84_1497) nifJ 1455283..1458843 (-) 3561 WP_253697158.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FORC84_RS07535 (FORC84_1498) - 1458936..1459577 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=289757 FORC84_RS07525 WP_002851255.1 1454942..1455259(-) (ctsR) [Campylobacter jejuni strain FORC_084]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=289757 FORC84_RS07525 WP_002851255.1 1454942..1455259(-) (ctsR) [Campylobacter jejuni strain FORC_084]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment