Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FORC84_RS06935 Genome accession   NZ_CP029054
Coordinates   1329676..1330644 (+) Length   322 a.a.
NCBI ID   WP_004297618.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_084     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324676..1335644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC84_RS06910 (FORC84_1367) cdsA 1325586..1326311 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  FORC84_RS06915 (FORC84_1368) - 1326320..1326658 (-) 339 WP_002852397.1 hypothetical protein -
  FORC84_RS06920 (FORC84_1369) - 1326660..1327967 (-) 1308 WP_002864240.1 NFACT family protein -
  FORC84_RS06925 (FORC84_1370) mobA 1328029..1328604 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  FORC84_RS06930 (FORC84_1371) pldA 1328601..1329590 (+) 990 WP_253697151.1 phospholipase A -
  FORC84_RS06935 (FORC84_1372) ceuB 1329676..1330644 (+) 969 WP_004297618.1 ABC transporter permease Machinery gene
  FORC84_RS06940 (FORC84_1373) ceuC 1330637..1331575 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  FORC84_RS06945 (FORC84_1374) ceuD 1331572..1332327 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  FORC84_RS06950 (FORC84_1375) ceuB 1332340..1333332 (+) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  FORC84_RS06960 (FORC84_1376) - 1333558..1334112 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35451.37 Da        Isoelectric Point: 9.6678

>NTDB_id=289749 FORC84_RS06935 WP_004297618.1 1329676..1330644(+) (ceuB) [Campylobacter jejuni strain FORC_084]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLIIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=289749 FORC84_RS06935 WP_004297618.1 1329676..1330644(+) (ceuB) [Campylobacter jejuni strain FORC_084]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATAATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment