Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EJF26_RS02495 Genome accession   NZ_CP034442
Coordinates   475763..479038 (-) Length   1091 a.a.
NCBI ID   WP_000772322.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470763..484038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS02485 - 470917..472095 (-) 1179 WP_001130893.1 hypothetical protein -
  EJF26_RS02490 rexA 472113..475766 (-) 3654 WP_000844091.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EJF26_RS02495 rexB 475763..479038 (-) 3276 WP_000772322.1 ATP-dependent nuclease subunit B Machinery gene
  EJF26_RS02500 - 479145..479564 (-) 420 WP_001138490.1 EVE domain-containing protein -
  EJF26_RS02505 - 479557..480018 (-) 462 WP_000922391.1 MarR family winged helix-turn-helix transcriptional regulator -
  EJF26_RS02510 - 480165..480974 (+) 810 WP_000593597.1 Cof-type HAD-IIB family hydrolase -
  EJF26_RS02515 - 481114..482022 (+) 909 WP_000859686.1 ATP-binding cassette domain-containing protein -
  EJF26_RS02520 - 482033..482785 (+) 753 WP_000581967.1 ABC transporter permease -
  EJF26_RS02525 - 482826..483704 (-) 879 WP_001106752.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124522.34 Da        Isoelectric Point: 6.0791

>NTDB_id=289746 EJF26_RS02495 WP_000772322.1 475763..479038(-) (rexB) [Streptococcus oralis subsp. dentisani strain F0392]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAGLDSKDLRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEQVTAYLNQ
SQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEEHVVDLLHRKGVEIVIGSYASKKAYTSPFAEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVDENDRDNLQIWSCLTQKEELELVARSIRQKLH
DNPDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGKSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQAEIDAFEQYLRYLGINGLPIFQQIFTKSHHGKFDLERLNAIRLRVLAPLETLFASRKQKAENLLQKWSAFLKNAALSK
QMQGLTSTMEVLEQERQAEVWKAFCHVLEQFATVFDGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEERAQLLIASSENLKKNRYTMLSLVNAARKQLILSAPSLLNENE
SKESAYLHELVSFGFSRREKRMNHKNLSKEDMGSYHSLLSSLVAYHQQVDSSENEQDVTFVTVLARVMGKKLDQKGLSNP
ALPTSPSSKPLAKDTLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPA
ENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKKEGEQNFFGAMYLEMAEPVQSLLTVKSLT
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFELLLAYNAHLYKKAAEKILKGQFAINPYTENGSSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKMRKELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=289746 EJF26_RS02495 WP_000772322.1 475763..479038(-) (rexB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTCTAACCAGAGAGGCAGAAGAGCTAGTTGCTGCAGG
CAAGCGTGTTTTCTACATCGCACCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTTGCTCAGATGGCTCGTTACCTGGTCTTGAATGATTTGCCAACTAAGACGAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAATGCCTTGCGGGACTCGATTCCAAGGATTTACGTGTTTATGGCGC
GATTAAACAAGACCCTCAATTTATCCAGCAGTTGATTGAACTTTATCACGAGATGACAACTGCTCAGATGAGTTTTTTAG
ACTTGGAAAGTTTGACCGATGAGGACAAGCGGGCAGACTTACTCTTGATTTTTGAGCAAGTGACTGCCTATCTCAATCAA
AGCCAGTTAGCTCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTCAGTCA
GCTGGCTTTGGTTATCGACGGTTTTACCCGTTTTTCTGCCGAGGAAGAGCATGTGGTGGATCTGCTCCATCGTAAAGGTG
TTGAGATTGTCATTGGTTCTTATGCAAGTAAGAAGGCCTATACCAGTCCGTTCGCTGAAGGCAATCTCTACCAAGCCAGT
GTAGAATTTCTTCATCATTTAGGTGCTAAATACCAAACGCCTGCTCAAGACCGTTCTCAGACTCATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAACTCACTTTGGAAGTCGATGAGAATGACCGTG
ATAATCTGCAAATCTGGTCTTGCTTGACGCAAAAGGAAGAGTTGGAGTTGGTAGCGCGTAGTATCCGTCAGAAATTACAT
GACAATCCAGACTTGAGTTACAAGCATTTTCGTATTCTGTTAGGAGATGTGGCTTCTTATCAATTGTCCTTAAAGACCAT
TTTTGACCAGTACCAGATTCCATTCTATCTAGGTAAAAGCGAATCTATGGCCCACCATCCCTTGACCCAGTATGTGGAGT
CAATTTTACGTTTAAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTTCTCAGAACAGGCTTGTATACTGACCTC
AGTCAGGCAGAGATTGATGCTTTTGAGCAATACCTCCGCTATCTTGGTATCAATGGCTTGCCAATCTTTCAGCAAATCTT
CACAAAATCCCACCATGGAAAATTTGATTTGGAACGCTTGAATGCCATTCGTTTGCGTGTTTTGGCTCCTCTTGAAACCT
TATTTGCCAGTCGGAAACAGAAGGCTGAAAATCTTTTGCAAAAGTGGAGTGCTTTTCTAAAAAACGCTGCTTTAAGCAAG
CAGATGCAAGGTTTAACATCCACTATGGAAGTCCTAGAGCAGGAAAGGCAAGCTGAAGTTTGGAAAGCTTTCTGTCATGT
TTTAGAACAATTTGCGACAGTTTTTGATGGTTCACAAGTTAGTCTGGAGGACTTCTTAGCCTTACTCCACTCTGGGATGA
GTTTATCTCAGTATCGCACTATTCCAGCGACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCACCACTGACT
GCTGACTTTGTCTATGCCATTGGACTCACTCAGGATCATCTACCAAAAATCGCGCAAAATACTAGTCTTTTGACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACAGAAGAGAGAGCGCAATTGCTGATTGCAAGCAGTGAAAACCTCAAAAAAAATC
GCTATACCATGCTTTCTTTAGTCAATGCCGCTCGTAAGCAGTTGATTTTGTCAGCACCAAGTCTTCTCAATGAAAACGAG
AGCAAGGAATCTGCCTATCTTCATGAACTGGTGAGTTTTGGATTTAGCAGAAGAGAAAAGAGAATGAACCATAAAAATCT
TAGCAAAGAAGATATGGGTTCTTATCACAGTCTCTTGTCTAGTCTGGTGGCTTATCATCAGCAAGTGGATTCTAGTGAAA
ATGAACAAGATGTGACCTTTGTCACTGTCTTGGCGCGTGTCATGGGGAAAAAACTTGACCAAAAAGGCCTTTCAAATCCT
GCCCTTCCAACTAGTCCAAGTAGCAAGCCATTAGCAAAGGATACCTTACAAGCTCTCTATCCTGCTGACAAGGAGTTTTA
CCTGTCTACCTCTGGTTTGACAGAGTTTTACCGAAATGAATACAGTTATTTCCTCCGCTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTGCGCCCAGATGCTCGCAGTCATGGGAATTTCTTGCACCGTATTTTTGAACGTGCCTTGAAACTGCCTGCT
GAAAATCCGTTTGATCAACGTCTGGAGCAAGCTATTAAGGAAACCAGTCAAGAACGCGAATTTGAAGCCATTTATCAAGA
AAGTTTAGAAGCCCAGTTTACCAAGGAAGTTCTTCTCGATGTCGCTCGGACCACTGGCCACATCCTTCGTCATAATCCAG
CCATCGAAACCATCCAAGAGGAAGCAACATTTGGAGGCAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGCAGTGTC
CATGTGCGAGGCAAGGTTGACCGCATTGACCGCCTGAAAGCTGATGGAGCACTAGGAGTAGTAGACTACAAGTCTAGTTT
GACTCAGTTCCAGTTTCCTCATTTTTTCAATGGACTTAATTCCCAACTGCCAACCTATCTTGCCGCCCTTAAAAAGGAAG
GGGAACAGAACTTTTTCGGAGCTATGTACTTAGAAATGGCAGAACCTGTCCAATCTCTGTTGACCGTTAAAAGTTTGACT
GGAGCAGTAGTAGAAGCCAGCAAGTCTATGAAATACCAAGGGCTCTTTTTAGAGAAAGAAAGCAGTCACTTGGGGGAATT
TTACAATAAAAATAAAGCCAACCAGCTGACAGATGAGGAATTTGAGCTCCTACTGGCCTACAATGCTCATCTTTACAAGA
AAGCAGCTGAAAAGATTTTAAAAGGCCAGTTCGCCATCAATCCGTACACAGAAAACGGCAGTAGTATTGCCCCATACGTC
CAGCAACATCAAGCCATTACAGGCTTTGAAGCCAATTACCATTTAGGTCAAGCTCGTTTCCTAGAAAAGTTAGACCTAGC
TGATGGCAAACGACTGGTGGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATGAGAAAGGAGTTGAACCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.826

100

0.898