Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EJF26_RS02450 Genome accession   NZ_CP034442
Coordinates   465297..466367 (-) Length   356 a.a.
NCBI ID   WP_000817876.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460297..471367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS02435 - 461382..462425 (+) 1044 WP_000752693.1 dihydrolipoamide acetyltransferase -
  EJF26_RS02440 lpdA 462472..464175 (+) 1704 WP_001162897.1 dihydrolipoyl dehydrogenase -
  EJF26_RS02445 - 464235..465224 (+) 990 WP_000873978.1 lipoate--protein ligase -
  EJF26_RS02450 xerS 465297..466367 (-) 1071 WP_000817876.1 tyrosine recombinase XerS Machinery gene
  EJF26_RS02460 - 466937..468487 (-) 1551 WP_000392523.1 ClC family H(+)/Cl(-) exchange transporter -
  EJF26_RS02465 - 468504..469283 (-) 780 WP_000207529.1 ribonuclease HII -
  EJF26_RS02470 ylqF 469270..470121 (-) 852 WP_000201288.1 ribosome biogenesis GTPase YlqF -
  EJF26_RS02475 mazE 470329..470544 (+) 216 WP_001098938.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  EJF26_RS02480 - 470528..470884 (+) 357 WP_000125492.1 type II toxin-antitoxin system PemK/MazF family toxin -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41252.39 Da        Isoelectric Point: 9.6757

>NTDB_id=289744 EJF26_RS02450 WP_000817876.1 465297..466367(-) (xerS) [Streptococcus oralis subsp. dentisani strain F0392]
MKREILLERIDKLKQIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFSWVLESGISNVDTMADIPLSVLEHMTKKDME
SFILYLRERPLLNANTSKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTKKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=289744 EJF26_RS02450 WP_000817876.1 465297..466367(-) (xerS) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
AAAGCTTACTGTTCCCTACAGTTTTACGACCTTGTACGAATACCTCAAGGAATACGATCGATTTTTTAGCTGGGTTTTGG
AGTCTGGCATTTCAAACGTTGATACAATGGCCGATATCCCCTTATCTGTCTTAGAACATATGACAAAAAAAGACATGGAA
TCCTTTATCCTATATCTACGAGAACGACCTTTACTGAATGCCAATACAAGCAAACAAGGCGTTTCGCAGACAACCATCAA
TCGGACCTTATCAGCCCTTTCTAGTCTTTACAAGTATCTGACCGAGGAAGTTGAAAACGACCAGGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACTAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACCTATATCGACCAGGAGTACCCACAACAACTCTCAAATCGCGCTCT
CTCGTCATTTAATAAGAATAAAGAACGTGATTTGGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAACCTGGACCTAAGAGACCTTAATCTCAAAATGATGGTCATTGATGTCACTCGAAAAGGTGGCAAACGTGACTCG
GTTAATGTCGCGGCATTTGCAAAACCTTATCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGAAAAAGAC
GGATACAGCTCTCTTTCTGACCTTATATCGTGGTGTTCCCAATCGTATCGATGCTTCTAGCGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCTCACAAACTACGCCATACCCTGGCAACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCACCAGTTAGGGCATGCTAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTGGATAGTTTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

96.91

100

0.969

Multiple sequence alignment