Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJF26_RS02210 Genome accession   NZ_CP034442
Coordinates   414025..414705 (+) Length   226 a.a.
NCBI ID   WP_000286915.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 409025..419705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS02200 - 409836..411506 (+) 1671 WP_000845245.1 formate--tetrahydrofolate ligase -
  EJF26_RS02205 pcrA 411691..413982 (+) 2292 WP_000992900.1 DNA helicase PcrA -
  EJF26_RS02210 radC 414025..414705 (+) 681 WP_000286915.1 DNA repair protein RadC Machinery gene
  EJF26_RS02215 - 414702..415391 (-) 690 WP_000743327.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EJF26_RS02220 - 415407..416048 (-) 642 WP_000653419.1 redox-sensing transcriptional repressor Rex -
  EJF26_RS02225 - 416137..416346 (-) 210 WP_000489415.1 DUF4649 family protein -
  EJF26_RS02230 - 416353..416700 (-) 348 WP_000863529.1 DUF1831 domain-containing protein -
  EJF26_RS02235 - 416705..417820 (-) 1116 WP_000639641.1 cysteine desulfurase family protein -
  EJF26_RS02240 - 417830..418789 (-) 960 WP_001283845.1 ribose-phosphate diphosphokinase -
  EJF26_RS02245 - 418901..419470 (-) 570 WP_000681300.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25527.51 Da        Isoelectric Point: 7.3508

>NTDB_id=289739 EJF26_RS02210 WP_000286915.1 414025..414705(+) (radC) [Streptococcus oralis subsp. dentisani strain F0392]
MYSISFQEDSLLPREKLVKEGVGALSNQELLAILLRTGTRQANVFEIAQKVLNSLNSLTDLKKMTLQELQSLSGIGRIKA
IELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILH
YAIKHMATSVILVHNHPSGAVSPSRNDDHVTKLVKEACELMGIVFLDHLIVSHSDYFSYREKTDMI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=289739 EJF26_RS02210 WP_000286915.1 414025..414705(+) (radC) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTATAGTATTTCATTCCAAGAAGATTCACTTTTGCCGAGAGAAAAACTGGTTAAAGAAGGAGTAGGGGCTCTGAGCAA
TCAAGAATTGTTAGCCATTCTGCTCAGAACTGGAACACGTCAGGCCAACGTTTTTGAAATTGCCCAAAAAGTCTTGAATA
GTCTCAACAGCTTAACTGATTTGAAAAAAATGACTCTGCAGGAATTGCAAAGTCTGTCTGGTATTGGACGTATTAAAGCC
ATTGAACTACAAGCGGTAATTGAACTAGGGCATCGTATTCACAAACATGAAACACTTGAGATGGAAAGTATTCTCAGTAG
TCAAAAGCTAGCCAAGAAAATGCAACAGGAACTTGGAGACAAAAAACAAGAGCACCTAGTGGCGCTCTATCTCAATACTC
AAAATCAAATCATTCATCAGCAGACCATCTTTATCGGATCTGCAACACGTAGTATTGCTGAACCGAGGGAAATCCTTCAC
TATGCCATTAAGCATATGGCCACCTCTGTGATTCTCGTTCATAACCATCCATCTGGTGCCGTATCTCCTAGTCGAAATGA
CGACCATGTCACTAAGCTGGTCAAGGAAGCTTGTGAACTGATGGGAATAGTTTTCTTGGACCATCTGATCGTCTCACACT
CGGATTACTTTAGTTACCGTGAAAAGACTGATATGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

93.363

100

0.934
  radC Streptococcus pneumoniae R6

92.92

100

0.929
  radC Streptococcus pneumoniae D39

92.92

100

0.929
  radC Streptococcus gordonii str. Challis substr. CH1

74.779

100

0.748
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

46.667

92.92

0.434

Multiple sequence alignment