Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EJF26_RS01885 Genome accession   NZ_CP034442
Coordinates   347172..348839 (+) Length   555 a.a.
NCBI ID   WP_000923605.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342172..353839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS01855 udk 342764..343402 (+) 639 WP_001181368.1 uridine kinase -
  EJF26_RS01860 xseA 343531..344871 (+) 1341 WP_000417474.1 exodeoxyribonuclease VII large subunit -
  EJF26_RS01865 - 344849..345061 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  EJF26_RS01870 - 345058..345933 (+) 876 WP_001231199.1 polyprenyl synthetase family protein -
  EJF26_RS01875 - 345926..346741 (+) 816 WP_001041050.1 TlyA family RNA methyltransferase -
  EJF26_RS01880 - 346734..347165 (+) 432 WP_001034389.1 arginine repressor -
  EJF26_RS01885 recN 347172..348839 (+) 1668 WP_000923605.1 DNA repair protein RecN Machinery gene
  EJF26_RS01890 - 348841..349569 (+) 729 WP_000133318.1 metallophosphoesterase family protein -
  EJF26_RS01895 lepA 349648..351471 (+) 1824 WP_001047159.1 translation elongation factor 4 -
  EJF26_RS01900 - 351622..352245 (+) 624 WP_000734758.1 hypothetical protein -
  EJF26_RS01905 dprA/cilB/dalA 352326..353174 (+) 849 WP_000705337.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62757.19 Da        Isoelectric Point: 4.5751

>NTDB_id=289734 EJF26_RS01885 WP_000923605.1 347172..348839(+) (recN) [Streptococcus oralis subsp. dentisani strain F0392]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRSLQELF
EEQGLELGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLELKQA
YQTSFDTYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYTMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIENLDFDGNRLMQVENRLDLLNTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEVKLVDLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNEAVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=289734 EJF26_RS01885 WP_000923605.1 347172..348839(+) (recN) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATAGAGGCGATTTCGCTCAATTTTGAAAAAGGCATGACAGTCTT
AACTGGTGAAACAGGTGCTGGGAAATCGATCATCATCGATGCTATGAACATGATGTTAGGAGCTAGAGCGACTACAGATG
TTATTCGTCATGGTGCTCCCAAGGCCGAGATTGAAGGGCTTTTCTCTGTTGAGAATAGTCGTTCTTTACAAGAACTCTTT
GAAGAGCAAGGCTTGGAATTGGGGGATGAGATTATCATCCGTCGTGAAATTCTTCAAAATGGACGAAGTGTTAGTCGCGT
TAATGGACAGATGGTCAATCTTTCTGTCCTGCGTGCAATCGGCCAGCATCTTGTCGATATTCATGGGCAACATGACCAAG
AAGAGTTAATGCGTCCACAACTTCATATCCAAATGTTGGATGAATTTGGTGATGCAGCATTTTTGGAGCTTAAACAAGCC
TATCAAACAAGCTTTGACACCTACCGCAAAATGCGTAAACAAGTTCTGGAAGTCAAGAAAAACCAGCAGGAACATAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGTGAAGACTTAGCTCTCAACC
AAGAACGAGATAAACTCCTAAACCACAAGAATATAGCAGATACCTTGACAAATGCCTACACTATGTTGGACAATGAGGAG
TTTTCCAGCCTAGCAAATGTCCGTTCGGCCATGAATGACATGGAAAGTGTCGAAGAATACGATCCTGAATACCGTGAAAT
TTCAAGTTCTCTATCAGAGACCTACTATGTTCTAGAAGATATTACCAAGCGTTTGGAAGATATCATTGAAAATCTAGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGCTTAGACCTTCTAAATACTATTACCCGCAAGTACGGTGGGACTGTG
GACGATGTTTTGCTTTATTTTGCCAAGATTACGGATGAGTACAATCTCTTGACAGGGAATAACCTTTCTTCCGAAGACAT
GGAAGCAGAGCTCAAAAAATTGGAAGTCAAGCTTGTCGACTTGGCAGGTCAGCTTGCATCTGCTCGTCATAATTTAGCCC
AGCAGCTTGAAGCTGAGATTAAGCAAGAATTGCAAGACCTCTATATGGAGAAGGCTCAATTTCAAGTTCGCTTTAGTAAG
AGCAAATTCAGCCGTGAAGGAAATGAAGCAGTTGAGTTTTACATTTCTACTAACCCAGGTGAGGACTTTAAACCTTTGGT
CAAAGTTGCGTCCGGTGGGGAATTATCCCGTCTCATGTTAGCTATCAAGTCTGCCTTTTCACGTAAGGAAGGTAAGACCA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCCCAAGCTATTGCTCAAAAGATTCACAAGATTGGC
CAATATGGTCAGGTTTTAGCTATTTCTCACTTACCACAAGTGATTGCCATTGCGGACTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCACTCAACGGTGTCAACGGTTCGCCTTTTGACTTTAGAAGAGCGAGTAGAGGAAGTAGCCAAAATGTTGG
CTGGGGAAAATGTAACCGAAGCGGCTCTTACCCAAGCTAGAGAATTATTGCAAACGAGGGAGAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438