Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DCO55_RS06980 Genome accession   NZ_CP029053
Coordinates   1343097..1344065 (+) Length   322 a.a.
NCBI ID   WP_253683945.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338097..1349065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS06955 (DCO55_07080) cdsA 1339007..1339732 (-) 726 WP_052782285.1 phosphatidate cytidylyltransferase -
  DCO55_RS06960 (DCO55_07085) - 1339741..1340079 (-) 339 WP_002852397.1 hypothetical protein -
  DCO55_RS06965 (DCO55_07090) - 1340081..1341388 (-) 1308 WP_253683942.1 NFACT family protein -
  DCO55_RS06970 (DCO55_07095) mobA 1341450..1342025 (+) 576 WP_052794238.1 molybdenum cofactor guanylyltransferase -
  DCO55_RS06975 (DCO55_07100) pldA 1342022..1343011 (+) 990 WP_052794909.1 phospholipase A -
  DCO55_RS06980 (DCO55_07105) ceuB 1343097..1344065 (+) 969 WP_253683945.1 ABC transporter permease Machinery gene
  DCO55_RS06985 (DCO55_07110) ceuC 1344058..1344996 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  DCO55_RS06990 (DCO55_07115) ceuD 1344993..1345748 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  DCO55_RS06995 (DCO55_07120) ceuB 1345761..1346753 (+) 993 WP_053869878.1 enterochelin ABC transporter substrate-binding protein CeuB -
  DCO55_RS07005 (DCO55_07130) - 1346979..1347533 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=289721 DCO55_RS06980 WP_253683945.1 1343097..1344065(+) (ceuB) [Campylobacter jejuni strain c021]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=289721 DCO55_RS06980 WP_253683945.1 1343097..1344065(+) (ceuB) [Campylobacter jejuni strain c021]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTTTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTGGGTGATAATCTTAG
AAAAAATCTCATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTATTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment