Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EJF26_RS00065 Genome accession   NZ_CP034442
Coordinates   9746..11527 (+) Length   593 a.a.
NCBI ID   WP_000857077.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4746..16527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS00045 metA 5335..6279 (+) 945 WP_001122697.1 homoserine O-succinyltransferase -
  EJF26_RS00050 - 6288..6965 (+) 678 WP_000220740.1 DnaD domain-containing protein -
  EJF26_RS00055 tpiA 7062..7820 (+) 759 WP_000087899.1 triose-phosphate isomerase -
  EJF26_RS00060 rcrP 8001..9737 (+) 1737 WP_000965826.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS00065 rcrQ 9746..11527 (+) 1782 WP_000857077.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS00070 - 11676..12194 (+) 519 WP_000229852.1 Dps family protein -
  EJF26_RS00075 - 12405..12743 (+) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  EJF26_RS00080 - 12746..13369 (+) 624 WP_000775201.1 Pr6Pr family membrane protein -
  EJF26_RS00085 - 13482..14633 (+) 1152 WP_000808700.1 MFS transporter -
  EJF26_RS00090 truA 14730..15479 (+) 750 WP_000199156.1 tRNA pseudouridine(38-40) synthase TruA -
  EJF26_RS00095 - 15469..16242 (+) 774 WP_000794796.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66747.11 Da        Isoelectric Point: 5.7300

>NTDB_id=289720 EJF26_RS00065 WP_000857077.1 9746..11527(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
MKTQSSLARLWSYLKAYRFSVFFAVFLKVLSVVMSVLEPFVLGLAITELTKNLLDMANGLAGAHINTGYIGTVLIIYLFR
GLLYELGSYYSNYFMTNAVQSMTQDLRNEMTEKLNRIPVSFFDKHQFGDLLGRFTSDVETVSNALQQSFLQIVNVVLTIV
LVMGMVLYLNFQLAIVVILSIPVTYFGARSILKRSQPYFKEQAAILGRMNGYVQENLTGFNVLKLYGREESSHKEFSKIT
DDLQRVGFKASFISGLMMPALHAVSDLTYLIVAVLGGLQVIAGRLTVGNMQAFVQYVWQVSQPIQNITQLAGQMQSAKSS
LDRIFDILDETEEVKGEELEILEPLTGQVTFQHVDFQYVENKPLIRDFNLEVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTAGAILVDGQDIRQLSRQDYRRQFGMVLQDAWLYEGTIKENLRFGNLDASDEEIIEAAKAANVDHFIRTLPSGYNMEMN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLQEKGFYYDLYQSQFSSKSDQVS

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=289720 EJF26_RS00065 WP_000857077.1 9746..11527(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAAACACAATCTAGTTTGGCTCGTTTGTGGAGCTATTTGAAAGCCTACCGTTTTTCTGTCTTTTTTGCAGTCTTTCT
AAAAGTTTTAAGCGTAGTCATGAGTGTCTTGGAGCCTTTTGTATTGGGGTTAGCCATTACGGAGTTGACAAAGAATCTCT
TAGATATGGCTAATGGTCTTGCAGGCGCTCATATCAATACTGGCTACATCGGAACTGTTTTAATCATTTACCTCTTTAGA
GGTCTCTTATATGAACTTGGGTCTTATTATTCCAACTATTTCATGACCAATGCAGTCCAGTCTATGACTCAGGATCTGCG
AAATGAAATGACTGAAAAGCTCAATCGTATCCCAGTATCTTTCTTTGATAAACACCAATTTGGTGATTTGTTGGGGCGCT
TTACCAGTGATGTTGAGACAGTGTCCAACGCTCTTCAACAGTCTTTCCTCCAAATTGTCAATGTCGTTCTGACGATTGTC
CTTGTCATGGGAATGGTTTTATACTTGAACTTTCAACTGGCTATAGTGGTGATTCTATCCATTCCAGTGACCTATTTCGG
TGCCAGAAGCATCCTGAAACGTTCTCAGCCTTATTTTAAAGAACAGGCGGCTATTTTAGGACGGATGAATGGCTATGTGC
AGGAAAATCTTACAGGTTTTAATGTCTTGAAACTCTACGGTCGTGAGGAATCCTCTCATAAAGAATTTTCTAAGATTACA
GACGACCTCCAACGTGTTGGCTTTAAAGCCAGCTTTATCTCTGGGCTCATGATGCCAGCCCTTCATGCTGTATCGGACTT
GACCTATCTGATCGTTGCAGTTCTTGGTGGTTTGCAAGTGATTGCGGGTCGCTTGACAGTGGGGAATATGCAGGCCTTTG
TTCAGTACGTTTGGCAGGTCAGCCAGCCTATCCAAAACATCACACAACTTGCGGGTCAAATGCAAAGTGCTAAGTCTTCG
TTAGACCGCATCTTCGATATCTTGGATGAGACAGAGGAAGTCAAGGGAGAAGAACTCGAAATCCTTGAACCCTTAACAGG
TCAGGTGACCTTCCAACATGTTGACTTCCAGTATGTTGAAAACAAACCATTGATTCGAGACTTTAATCTGGAAGTTCAAC
CGGGAGAGATGGTGGCGATTGTTGGTCCTACTGGAGCTGGTAAGACGACCTTGATCAATCTGCTTATGCGCTTTTACGAT
GTCACAGCAGGCGCAATCTTGGTTGACGGGCAGGATATTCGCCAGTTGTCACGACAAGACTACCGCCGTCAGTTTGGGAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGTACGATCAAAGAAAACCTACGTTTTGGAAATCTTGACGCCAGTGACGAAG
AAATAATAGAAGCTGCCAAAGCGGCAAATGTAGATCACTTTATCCGAACGCTTCCTAGTGGTTACAACATGGAGATGAAC
CAAGAGTCCAGCAATATTTCCCTCGGACAAAAACAACTTTTGACCATCGCGCGTGCTCTCCTAGCCAATCCTAAAATTCT
TATTTTGGATGAAGCGACTTCCTCTGTTGACACCCGTTTGGAACTTTTGATTCAAAAAGCCATGAAACGCTTGATGAAGG
GAAGAACAAGCTTTGTCATCGCCCACCGTCTCTCTACTATTCAAGAAGCGGATAAGATTCTCGTTCTTAAGGATGGACAG
ATTATTGAGCAGGGAAATCATGAAAGCTTGCTCCAAGAAAAAGGCTTTTATTATGATCTGTACCAAAGCCAATTTTCGAG
CAAATCTGATCAAGTCAGCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.919

99.831

0.438

Multiple sequence alignment