Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DCO55_RS06935 Genome accession   NZ_CP029053
Coordinates   1335024..1335539 (-) Length   171 a.a.
NCBI ID   WP_240382966.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330024..1340539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS06920 (DCO55_07045) - 1330139..1331953 (-) 1815 WP_167843207.1 motility associated factor glycosyltransferase family protein -
  DCO55_RS06925 (DCO55_07050) - 1331950..1333773 (-) 1824 WP_167843208.1 motility associated factor glycosyltransferase family protein -
  DCO55_RS06930 (DCO55_07055) - 1333783..1335024 (-) 1242 WP_253683938.1 DUF2920 family protein -
  DCO55_RS06935 (DCO55_07060) ctsG 1335024..1335539 (-) 516 WP_240382966.1 type II secretion system protein Machinery gene
  DCO55_RS06940 (DCO55_07065) tsaD 1335540..1336547 (-) 1008 WP_032590527.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DCO55_RS06945 (DCO55_07070) - 1336544..1337938 (-) 1395 WP_253683940.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DCO55_RS06950 (DCO55_07075) dxr 1337940..1339010 (-) 1071 WP_052821042.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DCO55_RS06955 (DCO55_07080) cdsA 1339007..1339732 (-) 726 WP_052782285.1 phosphatidate cytidylyltransferase -
  DCO55_RS06960 (DCO55_07085) - 1339741..1340079 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.53 Da        Isoelectric Point: 6.4682

>NTDB_id=289720 DCO55_RS06935 WP_240382966.1 1335024..1335539(-) (ctsG) [Campylobacter jejuni strain c021]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSVKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=289720 DCO55_RS06935 WP_240382966.1 1335024..1335539(-) (ctsG) [Campylobacter jejuni strain c021]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTGTAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment