Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EJF26_RS00060 Genome accession   NZ_CP034442
Coordinates   8001..9737 (+) Length   578 a.a.
NCBI ID   WP_000965826.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001..14737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS00030 rplA 3322..4011 (+) 690 WP_001085675.1 50S ribosomal protein L1 -
  EJF26_RS00035 - 4085..4522 (+) 438 WP_000943034.1 GNAT family N-acetyltransferase -
  EJF26_RS00040 - 4641..5153 (+) 513 WP_001049316.1 adenine phosphoribosyltransferase -
  EJF26_RS00045 metA 5335..6279 (+) 945 WP_001122697.1 homoserine O-succinyltransferase -
  EJF26_RS00050 - 6288..6965 (+) 678 WP_000220740.1 DnaD domain-containing protein -
  EJF26_RS00055 tpiA 7062..7820 (+) 759 WP_000087899.1 triose-phosphate isomerase -
  EJF26_RS00060 rcrP 8001..9737 (+) 1737 WP_000965826.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS00065 rcrQ 9746..11527 (+) 1782 WP_000857077.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS00070 - 11676..12194 (+) 519 WP_000229852.1 Dps family protein -
  EJF26_RS00075 - 12405..12743 (+) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  EJF26_RS00080 - 12746..13369 (+) 624 WP_000775201.1 Pr6Pr family membrane protein -
  EJF26_RS00085 - 13482..14633 (+) 1152 WP_000808700.1 MFS transporter -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65050.34 Da        Isoelectric Point: 6.5176

>NTDB_id=289719 EJF26_RS00060 WP_000965826.1 8001..9737(+) (rcrP) [Streptococcus oralis subsp. dentisani strain F0392]
MLYIWSYLKKYPKWLFLDFFGAVFFVIVNLGLPTVLARMIDEGVNKGNEHQLYVWATIMLVIILCGTLGRIVLSYAASKL
TTNMVKDMRDDLYAKLQEYSHHEYEKIGVSSLVTRITSDAFVLMQFAEQTLKLGVITPMMMLSSILMIFLTSPSLAWIVA
FAVPFLAVVVIYVAVKTRPLSEKQQKTLDKINQYARENLMGLRVIRAFAREEFQEERFAGQNAVYAANSNRLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPIKQGSLQIGDLVAFIEYSFHALLSFLFLSNLFTMYPRTAVSSERLKEVMDMPISIDSNE
GGVRETATHGYLEFENVTFAYPGETENPVLHNISFSAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGKIKVDGIDVRD
YRLKSLRQKIGFIPQKALLFTGTIAENIRYGKEDASHKDLHQAADVAQAKDFIESREEGFATHLAEGGSNLSGGQKQRLS
IARAVIKNPDIYIFDDSFSALDYRTDAILRRRLKEVTQNATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMETND
IYREIAESQLKNASLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=289719 EJF26_RS00060 WP_000965826.1 8001..9737(+) (rcrP) [Streptococcus oralis subsp. dentisani strain F0392]
ATGCTCTATATTTGGTCTTATTTGAAAAAATATCCCAAGTGGTTATTCCTGGATTTCTTTGGCGCGGTTTTCTTTGTTAT
CGTCAATCTTGGACTGCCAACTGTTCTGGCTCGGATGATTGATGAAGGTGTGAATAAAGGAAATGAACATCAATTGTATG
TTTGGGCCACTATCATGCTGGTGATTATCCTATGTGGAACCTTGGGGCGTATAGTCTTGTCCTACGCAGCTAGTAAGCTG
ACGACCAATATGGTCAAGGATATGAGGGATGATCTCTATGCCAAATTACAAGAGTATTCTCATCATGAATATGAAAAGAT
AGGAGTATCTTCACTGGTTACTCGTATTACCAGTGATGCCTTTGTTCTCATGCAATTTGCAGAACAGACCTTAAAACTGG
GTGTCATCACTCCCATGATGATGTTGTCTAGTATTTTAATGATCTTTTTGACCAGCCCGTCATTGGCTTGGATAGTAGCT
TTTGCAGTACCTTTCTTGGCTGTGGTGGTTATTTATGTGGCTGTCAAGACTCGCCCTTTGTCAGAGAAACAGCAGAAAAC
TTTGGACAAAATCAATCAATACGCTCGTGAAAATCTGATGGGGCTTCGTGTCATTCGTGCCTTTGCTCGTGAGGAGTTTC
AAGAAGAACGCTTTGCAGGACAAAATGCGGTCTATGCAGCTAATTCCAATCGTCTGTTTAAACTAACTGGCTTGACGGAA
CCCTTGTTTGTTCAGATTATCATTGCCATGATTGTGGCTATTGTCTGGTTTGCTCTGGATCCTATCAAACAAGGTAGTTT
GCAAATTGGGGATCTAGTAGCCTTTATCGAATATAGTTTTCACGCCCTCTTGTCCTTCCTTTTCCTATCTAATCTCTTCA
CTATGTACCCTCGTACAGCTGTTTCGAGTGAACGGTTGAAAGAAGTCATGGATATGCCAATCTCTATTGATTCCAATGAA
GGAGGCGTTAGAGAGACAGCAACCCACGGCTATTTGGAATTTGAAAATGTCACCTTTGCCTATCCTGGTGAGACGGAAAA
TCCTGTTTTGCACAATATTTCTTTCAGTGCTAAACCAGGTGAAACCATTGCTTTTATCGGATCGACCGGATCGGGCAAGT
CCTCTCTTGTGCAATTGATTCCTCGTTTTTACGATGTCACGCTTGGGAAAATCAAAGTTGATGGTATCGATGTGAGAGAT
TATCGCCTCAAGTCTCTCCGTCAAAAGATTGGTTTTATTCCGCAGAAGGCCTTGCTCTTTACCGGAACTATCGCTGAAAA
TATCCGCTATGGGAAGGAAGATGCTAGTCACAAAGACCTACATCAGGCAGCAGATGTGGCGCAAGCCAAAGATTTTATCG
AAAGCCGAGAAGAAGGCTTTGCGACCCATCTAGCTGAAGGTGGAAGCAATCTTTCTGGGGGACAGAAGCAACGTCTCTCA
ATTGCCCGAGCGGTTATAAAGAATCCTGATATCTATATTTTTGACGATTCTTTCTCAGCCTTGGACTATCGCACGGATGC
CATTTTACGCCGTCGTCTCAAGGAAGTAACACAGAATGCTACGGTTTTAATCGTCGCTCAACGTGTCGGAACCATCATGG
ATGCGGATCAGATCATCGTTCTTGATAAAGGGGAAATCGTGGGTCGCGGTCGACATGAGGAATTGATGGAAACCAATGAC
ATCTATCGTGAAATTGCTGAGTCGCAGTTGAAAAACGCATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(16-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40

91.696

0.367