Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   DCO55_RS06015 Genome accession   NZ_CP029053
Coordinates   1148950..1149894 (+) Length   314 a.a.
NCBI ID   WP_253683867.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1122708..1160525 1148950..1149894 within 0


Gene organization within MGE regions


Location: 1122708..1160525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS05900 (DCO55_06020) pglI 1122708..1123637 (-) 930 WP_002866141.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  DCO55_RS05905 (DCO55_06025) pglH 1123630..1124709 (-) 1080 WP_079268903.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  DCO55_RS05910 (DCO55_06030) pglK 1124706..1126400 (-) 1695 WP_032580865.1 ABC-type lipopolysaccharide transporter PglK -
  DCO55_RS05915 (DCO55_06035) galE 1126394..1127380 (-) 987 WP_052775086.1 UDP-glucose 4-epimerase GalE -
  DCO55_RS05920 (DCO55_06040) - 1127439..1128233 (-) 795 WP_032583024.1 3'-5' exonuclease -
  DCO55_RS05925 (DCO55_06045) waaC 1128299..1129327 (+) 1029 WP_139849854.1 lipopolysaccharide heptosyltransferase I -
  DCO55_RS05930 (DCO55_06050) htrB 1129317..1130204 (+) 888 WP_139849856.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  DCO55_RS05935 (DCO55_06055) - 1130201..1131754 (+) 1554 WP_139849858.1 glycosyltransferase -
  DCO55_RS05940 (DCO55_06060) - 1131751..1132803 (+) 1053 WP_139849860.1 glycosyltransferase family 4 protein -
  DCO55_RS05945 (DCO55_06065) - 1132800..1133999 (-) 1200 WP_253683863.1 glycosyltransferase family 8 protein -
  DCO55_RS05950 (DCO55_06070) - 1134047..1135120 (-) 1074 WP_002844818.1 glycosyltransferase family 2 protein -
  DCO55_RS05955 (DCO55_06075) rfbH 1135136..1136458 (-) 1323 WP_002844816.1 lipopolysaccharide biosynthesis protein RfbH -
  DCO55_RS05960 (DCO55_06080) - 1136461..1137378 (-) 918 WP_002844814.1 NAD-dependent epimerase/dehydratase family protein -
  DCO55_RS05965 (DCO55_06085) - 1137382..1139139 (-) 1758 WP_002844812.1 thiamine pyrophosphate-binding protein -
  DCO55_RS05970 (DCO55_06090) rfbG 1139156..1140229 (-) 1074 WP_002844810.1 CDP-glucose 4,6-dehydratase -
  DCO55_RS05975 (DCO55_06095) rfbF 1140233..1141048 (-) 816 WP_002844809.1 glucose-1-phosphate cytidylyltransferase -
  DCO55_RS05980 (DCO55_06100) - 1141045..1142016 (-) 972 WP_002844807.1 alpha-1,2-fucosyltransferase -
  DCO55_RS05985 (DCO55_06105) - 1142030..1143049 (-) 1020 WP_002844805.1 glycosyltransferase family 10 -
  DCO55_RS05990 (DCO55_06110) - 1143427..1144596 (-) 1170 WP_182263765.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  DCO55_RS05995 (DCO55_06115) - 1144589..1145527 (-) 939 WP_002844801.1 NAD-dependent epimerase/dehydratase family protein -
  DCO55_RS06000 (DCO55_06120) gmd 1145520..1146659 (-) 1140 WP_002844800.1 GDP-mannose 4,6-dehydratase -
  DCO55_RS06005 (DCO55_06125) - 1146660..1148027 (-) 1368 WP_002844799.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  DCO55_RS06010 (DCO55_06130) - 1148070..1148891 (-) 822 WP_253683865.1 glycosyltransferase family 2 protein -
  DCO55_RS06015 (DCO55_06135) waaF 1148950..1149894 (+) 945 WP_253683867.1 lipopolysaccharide heptosyltransferase II Regulator
  DCO55_RS06020 (DCO55_06140) - 1149887..1150651 (-) 765 WP_253683870.1 glycosyltransferase family 25 protein -
  DCO55_RS06025 (DCO55_06145) gmhA 1150651..1151211 (-) 561 WP_253683872.1 D-sedoheptulose 7-phosphate isomerase -
  DCO55_RS06030 (DCO55_06150) rfaE1 1151208..1152593 (-) 1386 WP_253683874.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  DCO55_RS06035 (DCO55_06155) rfaD 1152586..1153539 (-) 954 WP_167844445.1 ADP-glyceromanno-heptose 6-epimerase -
  DCO55_RS06040 (DCO55_06160) gmhB 1153540..1154100 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  DCO55_RS06045 (DCO55_06165) - 1154182..1154484 (+) 303 WP_002852762.1 cytochrome c -
  DCO55_RS06050 (DCO55_06170) ccoS 1154507..1154713 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  DCO55_RS06055 (DCO55_06175) - 1154710..1157067 (-) 2358 WP_253683876.1 heavy metal translocating P-type ATPase -
  DCO55_RS06060 (DCO55_06180) rho 1157176..1158474 (+) 1299 WP_052781704.1 transcription termination factor Rho -
  DCO55_RS06065 (DCO55_06185) dnaX 1158478..1160007 (+) 1530 WP_052781703.1 DNA polymerase III subunit gamma/tau -
  DCO55_RS06070 - 1160004..1160525 (-) 522 Protein_1189 DUF2165 family protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36051.49 Da        Isoelectric Point: 10.3316

>NTDB_id=289717 DCO55_RS06015 WP_253683867.1 1148950..1149894(+) (waaF) [Campylobacter jejuni strain c021]
MKVFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=289717 DCO55_RS06015 WP_253683867.1 1148950..1149894(+) (waaF) [Campylobacter jejuni strain c021]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.013

99.682

0.917

Multiple sequence alignment