Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PAKB6_RS26810 Genome accession   NZ_CP034429
Coordinates   5677820..5678416 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain GIMC5015:PAKB6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5672820..5683416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKB6_RS26790 (PAKB6_5278) aroK 5673951..5674469 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PAKB6_RS26795 (PAKB6_5279) pilQ 5674481..5676625 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  PAKB6_RS26800 (PAKB6_5280) comL/pilP 5676679..5677203 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PAKB6_RS26805 (PAKB6_5281) pilO 5677200..5677823 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PAKB6_RS26810 (PAKB6_5282) pilN 5677820..5678416 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PAKB6_RS26815 (PAKB6_5283) pilM 5678416..5679480 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PAKB6_RS26820 (PAKB6_5284) - 5679665..5682133 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=289610 PAKB6_RS26810 WP_003095839.1 5677820..5678416(-) (pilN) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=289610 PAKB6_RS26810 WP_003095839.1 5677820..5678416(-) (pilN) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369