Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AXD23_RS14855 Genome accession   NZ_CP029038
Coordinates   2870235..2870840 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN045763     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2865235..2875840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXD23_RS14840 (AXD23_14840) helD 2865452..2867506 (-) 2055 WP_000420500.1 DNA helicase IV -
  AXD23_RS14845 (AXD23_14845) - 2867630..2868076 (+) 447 WP_001261222.1 YccF domain-containing protein -
  AXD23_RS14850 (AXD23_14850) yccS 2868095..2870248 (+) 2154 WP_000950877.1 YccS family putative transporter -
  AXD23_RS14855 (AXD23_14855) sxy/tfoX 2870235..2870840 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AXD23_RS14860 (AXD23_14860) sulA 2871057..2871566 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  AXD23_RS14865 (AXD23_14865) ompA 2871923..2872975 (+) 1053 WP_001670727.1 porin OmpA -
  AXD23_RS14870 (AXD23_14870) matP 2873047..2873499 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AXD23_RS14875 (AXD23_14875) - 2873685..2875445 (+) 1761 WP_000156458.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=289608 AXD23_RS14855 WP_001202375.1 2870235..2870840(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN045763]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=289608 AXD23_RS14855 WP_001202375.1 2870235..2870840(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN045763]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment