Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DDE72_RS19500 Genome accession   NZ_CP029034
Coordinates   3908030..3908719 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3903030..3913719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS19475 (DDE72_19475) degS 3903313..3904476 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DDE72_RS19480 (DDE72_19480) degU 3904553..3905242 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DDE72_RS19485 (DDE72_19485) - 3905340..3906188 (+) 849 WP_032876160.1 DegV family protein -
  DDE72_RS19490 (DDE72_19490) comFA 3906297..3907682 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  DDE72_RS19495 (DDE72_19495) - 3907740..3908024 (+) 285 WP_003151389.1 competence protein ComFB -
  DDE72_RS19500 (DDE72_19500) comFC 3908030..3908719 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  DDE72_RS19505 (DDE72_19505) - 3908793..3909212 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  DDE72_RS19510 (DDE72_19510) flgM 3909282..3909548 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DDE72_RS19515 (DDE72_19515) - 3909563..3910045 (+) 483 WP_032876168.1 flagellar protein FlgN -
  DDE72_RS19520 (DDE72_19520) flgK 3910061..3911578 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  DDE72_RS19525 (DDE72_19525) flgL 3911590..3912507 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  DDE72_RS19530 (DDE72_19530) - 3912598..3913167 (+) 570 WP_007407476.1 DUF6470 family protein -
  DDE72_RS19535 (DDE72_19535) fliW 3913197..3913628 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=289549 DDE72_RS19500 WP_196770545.1 3908030..3908719(+) (comFC) [Bacillus velezensis strain LDO2]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=289549 DDE72_RS19500 WP_196770545.1 3908030..3908719(+) (comFC) [Bacillus velezensis strain LDO2]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment