Detailed information NTG0289542

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: DDE72_RS18515
• Genome accession: NZ_CP029034
• Coordinates: 3716733..3717878 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LDO2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3711733..3722878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDE72_RS18490 (DDE72_18490)	-	3712016..3712449 (+)	434	Protein_3559	hypothetical protein	-
DDE72_RS18495 (DDE72_18495)	-	3712474..3714546 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
DDE72_RS18500 (DDE72_18500)	speE	3714746..3715576 (+)	831	WP_003151052.1	spermidine synthase	-
DDE72_RS18505 (DDE72_18505)	speB	3715635..3716507 (+)	873	WP_032875884.1	agmatinase	-
DDE72_RS18510 (DDE72_18510)	-	3716630..3716749 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
DDE72_RS18515 (DDE72_18515)	rapF	3716733..3717878 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
DDE72_RS18525 (DDE72_18525)	-	3718109..3719464 (+)	1356	WP_032875887.1	YncE family protein	-
DDE72_RS18530 (DDE72_18530)	-	3719504..3720880 (+)	1377	WP_032875890.1	YncE family protein	-
DDE72_RS18535 (DDE72_18535)	-	3720887..3721399 (-)	513	Protein_3567	bacteriocin biosynthesis protein AlbG	-
DDE72_RS18540 (DDE72_18540)	-	3721553..3721981 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=289542 DDE72_RS18515 WP_074534220.1 3716733..3717878(-) (rapF) [Bacillus velezensis strain LDO2]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=289542 DDE72_RS18515 WP_074534220.1 3716733..3717878(-) (rapF) [Bacillus velezensis strain LDO2]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541