Detailed information NTG0289538

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DDE72_RS16720
• Genome accession: NZ_CP029034
• Coordinates: 3365716..3366828 (-)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LDO2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3360716..3371828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDE72_RS16705 (DDE72_16705)	gyrA	3360805..3363264 (-)	2460	WP_032875298.1	DNA gyrase subunit A	-
DDE72_RS16710 (DDE72_16710)	gyrB	3363480..3365396 (-)	1917	WP_007409911.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
DDE72_RS16715 (DDE72_16715)	-	3365453..3365698 (-)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
DDE72_RS16720 (DDE72_16720)	recF	3365716..3366828 (-)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
DDE72_RS16725 (DDE72_16725)	rlbA	3366844..3367059 (-)	216	WP_004392910.1	ribosome maturation protein RlbA	-
DDE72_RS16730 (DDE72_16730)	dnaN	3367194..3368330 (-)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
DDE72_RS16735 (DDE72_16735)	dnaA	3368515..3369855 (-)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
DDE72_RS16745 (DDE72_16745)	rpmH	3370475..3370609 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
DDE72_RS16750 (DDE72_16750)	rnpA	3370764..3371114 (+)	351	WP_004392944.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=289538 DDE72_RS16720 WP_007409910.1 3365716..3366828(-) (recF) [Bacillus velezensis strain LDO2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=289538 DDE72_RS16720 WP_007409910.1 3365716..3366828(-) (recF) [Bacillus velezensis strain LDO2]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAAAATGCCCAAGGCAAAACCAATTTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943