Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DDE72_RS16490 Genome accession   NZ_CP029034
Coordinates   3324020..3324310 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3319020..3329310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS16475 (DDE72_16475) - 3319241..3320566 (-) 1326 WP_087920785.1 G5 and 3D domain-containing protein -
  DDE72_RS16480 (DDE72_16480) - 3320701..3321468 (-) 768 WP_032872179.1 TatD family hydrolase -
  DDE72_RS16485 (DDE72_16485) metG 3321545..3323536 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  DDE72_RS16490 (DDE72_16490) abrB 3324020..3324310 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DDE72_RS16495 (DDE72_16495) rsmI 3324360..3325241 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DDE72_RS16500 (DDE72_16500) - 3325216..3325515 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  DDE72_RS16505 (DDE72_16505) - 3325502..3326245 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DDE72_RS16510 (DDE72_16510) yabA 3326306..3326665 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  DDE72_RS16515 (DDE72_16515) ricT 3326680..3327507 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DDE72_RS16520 (DDE72_16520) holB 3327510..3328499 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  DDE72_RS16525 (DDE72_16525) - 3328511..3328951 (-) 441 WP_004264730.1 DUF327 family protein -
  DDE72_RS16530 (DDE72_16530) darA 3328964..3329293 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=289536 DDE72_RS16490 WP_169510469.1 3324020..3324310(+) (abrB) [Bacillus velezensis strain LDO2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=289536 DDE72_RS16490 WP_169510469.1 3324020..3324310(+) (abrB) [Bacillus velezensis strain LDO2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment