Detailed information NTG0289530

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: DDE72_RS14720
• Genome accession: NZ_CP029034
• Coordinates: 2971828..2972976 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LDO2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2966828..2977976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDE72_RS14690 (DDE72_14690)	-	2966964..2967722 (-)	759	WP_007609404.1	ABC transporter ATP-binding protein	-
DDE72_RS14695 (DDE72_14695)	-	2967716..2968663 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
DDE72_RS14700 (DDE72_14700)	ceuB	2968653..2969606 (-)	954	WP_032872883.1	ABC transporter permease	Machinery gene
DDE72_RS14705 (DDE72_14705)	-	2970020..2971384 (+)	1365	WP_007609394.1	aspartate kinase	-
DDE72_RS14710 (DDE72_14710)	-	2971479..2971574 (+)	96	WP_021495118.1	YjcZ family sporulation protein	-
DDE72_RS14715 (DDE72_14715)	phrC	2971725..2971844 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
DDE72_RS14720 (DDE72_14720)	rapC	2971828..2972976 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
DDE72_RS14725 (DDE72_14725)	-	2973129..2974562 (-)	1434	WP_161503657.1	HAMP domain-containing sensor histidine kinase	-
DDE72_RS14730 (DDE72_14730)	-	2974549..2975232 (-)	684	WP_032872879.1	response regulator transcription factor	-
DDE72_RS14735 (DDE72_14735)	-	2975445..2976875 (+)	1431	WP_032872876.1	ABC transporter permease	-
DDE72_RS14740 (DDE72_14740)	-	2976890..2977573 (+)	684	WP_032872874.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=289530 DDE72_RS14720 WP_007410270.1 2971828..2972976(-) (rapC) [Bacillus velezensis strain LDO2]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=289530 DDE72_RS14720 WP_007410270.1 2971828..2972976(-) (rapC) [Bacillus velezensis strain LDO2]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568