Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   DDE72_RS11040 Genome accession   NZ_CP029034
Coordinates   2276444..2277397 (-) Length   317 a.a.
NCBI ID   WP_007610578.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271444..2282397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS11010 (DDE72_11010) - 2271598..2272584 (-) 987 WP_029325950.1 ABC transporter ATP-binding protein -
  DDE72_RS11015 (DDE72_11015) - 2272758..2273543 (-) 786 WP_029325951.1 DUF2268 domain-containing protein -
  DDE72_RS11020 (DDE72_11020) fabF 2273626..2274864 (-) 1239 WP_032874451.1 beta-ketoacyl-ACP synthase II -
  DDE72_RS11025 (DDE72_11025) - 2274887..2275825 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  DDE72_RS11030 (DDE72_11030) - 2275993..2276211 (+) 219 WP_032874450.1 hypothetical protein -
  DDE72_RS11035 (DDE72_11035) comZ 2276240..2276431 (-) 192 WP_003155061.1 ComZ family protein Regulator
  DDE72_RS11040 (DDE72_11040) med 2276444..2277397 (-) 954 WP_007610578.1 BMP family ABC transporter substrate-binding protein Regulator
  DDE72_RS11045 (DDE72_11045) - 2277487..2278053 (-) 567 WP_032874449.1 hypothetical protein -
  DDE72_RS11050 (DDE72_11050) - 2278136..2278870 (-) 735 WP_032874448.1 hypothetical protein -
  DDE72_RS11060 (DDE72_11060) - 2279129..2279314 (+) 186 WP_032874447.1 YjzD family protein -
  DDE72_RS11065 (DDE72_11065) - 2279351..2279530 (-) 180 WP_003155070.1 YjzC family protein -
  DDE72_RS11070 (DDE72_11070) argF 2279606..2280577 (-) 972 WP_032874446.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35357.02 Da        Isoelectric Point: 4.6686

>NTDB_id=289518 DDE72_RS11040 WP_007610578.1 2276444..2277397(-) (med) [Bacillus velezensis strain LDO2]
MITRLVMIFSLLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=289518 DDE72_RS11040 WP_007610578.1 2276444..2277397(-) (med) [Bacillus velezensis strain LDO2]
TTGATCACCAGGCTTGTCATGATCTTTTCTCTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGACAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAAAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782

Multiple sequence alignment