Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DDE72_RS09635 Genome accession   NZ_CP029034
Coordinates   2012176..2012640 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain LDO2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007176..2017640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS09610 (DDE72_09610) - 2007683..2008231 (-) 549 WP_032874729.1 hypothetical protein -
  DDE72_RS09615 (DDE72_09615) fadH 2008345..2009109 (-) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  DDE72_RS09620 (DDE72_09620) - 2009253..2010116 (+) 864 WP_032874726.1 metallophosphoesterase -
  DDE72_RS09625 (DDE72_09625) - 2010191..2010685 (+) 495 WP_087920795.1 L,D-transpeptidase family protein -
  DDE72_RS09630 (DDE72_09630) - 2010761..2012053 (+) 1293 WP_007611093.1 MFS transporter -
  DDE72_RS09635 (DDE72_09635) kre 2012176..2012640 (+) 465 WP_003154622.1 YkyB family protein Regulator
  DDE72_RS09640 (DDE72_09640) cheV 2012683..2013594 (-) 912 WP_014417604.1 chemotaxis protein CheV -
  DDE72_RS19810 - 2013783..2013944 (+) 162 WP_007409608.1 hypothetical protein -
  DDE72_RS09650 (DDE72_09650) - 2014145..2015314 (+) 1170 WP_032874724.1 aminotransferase A -
  DDE72_RS09655 (DDE72_09655) - 2015339..2017159 (-) 1821 WP_032874722.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=289510 DDE72_RS09635 WP_003154622.1 2012176..2012640(+) (kre) [Bacillus velezensis strain LDO2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=289510 DDE72_RS09635 WP_003154622.1 2012176..2012640(+) (kre) [Bacillus velezensis strain LDO2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment