Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DDE72_RS09420 Genome accession   NZ_CP029034
Coordinates   1975987..1976271 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1970987..1981271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS09400 (DDE72_09400) ade 1971093..1972826 (-) 1734 WP_032874763.1 adenine deaminase -
  DDE72_RS09405 (DDE72_09405) ktrC 1972975..1973640 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DDE72_RS09410 (DDE72_09410) - 1973681..1974508 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  DDE72_RS09415 (DDE72_09415) - 1974510..1975814 (-) 1305 WP_032874761.1 ATP-binding protein -
  DDE72_RS09420 (DDE72_09420) abrB 1975987..1976271 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DDE72_RS09430 (DDE72_09430) mreBH 1976543..1977550 (+) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  DDE72_RS09435 (DDE72_09435) - 1977622..1977756 (+) 135 WP_003154559.1 protein YkpC -
  DDE72_RS09440 (DDE72_09440) - 1977857..1979089 (+) 1233 WP_007409644.1 aminopeptidase -
  DDE72_RS09445 (DDE72_09445) - 1979119..1980027 (-) 909 WP_032874760.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=289508 DDE72_RS09420 WP_003154557.1 1975987..1976271(-) (abrB) [Bacillus velezensis strain LDO2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=289508 DDE72_RS09420 WP_003154557.1 1975987..1976271(-) (abrB) [Bacillus velezensis strain LDO2]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment