Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DDE72_RS08000 Genome accession   NZ_CP029034
Coordinates   1586743..1587177 (-) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain LDO2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1581743..1592177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS07965 (DDE72_07965) - 1581756..1582109 (+) 354 WP_032874987.1 multidrug efflux SMR transporter -
  DDE72_RS07970 (DDE72_07970) - 1582123..1582575 (-) 453 WP_032874985.1 OsmC family protein -
  DDE72_RS07975 (DDE72_07975) - 1582636..1583343 (-) 708 WP_032874983.1 poly-gamma-glutamate hydrolase family protein -
  DDE72_RS07980 (DDE72_07980) - 1583599..1583832 (-) 234 WP_032875236.1 hypothetical protein -
  DDE72_RS07985 (DDE72_07985) - 1584011..1585339 (+) 1329 WP_032874981.1 S8 family peptidase -
  DDE72_RS07990 (DDE72_07990) - 1585532..1585894 (+) 363 WP_007410383.1 hypothetical protein -
  DDE72_RS07995 (DDE72_07995) - 1585928..1586683 (-) 756 WP_032874979.1 YoaK family protein -
  DDE72_RS08000 (DDE72_08000) nucA/comI 1586743..1587177 (-) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DDE72_RS08005 (DDE72_08005) - 1587466..1588677 (+) 1212 WP_032875233.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=289503 DDE72_RS08000 WP_007611576.1 1586743..1587177(-) (nucA/comI) [Bacillus velezensis strain LDO2]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=289503 DDE72_RS08000 WP_007611576.1 1586743..1587177(-) (nucA/comI) [Bacillus velezensis strain LDO2]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATAGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment