Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DDE72_RS06260 Genome accession   NZ_CP029034
Coordinates   1213205..1213813 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain LDO2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1208205..1218813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS06240 (DDE72_06240) dnaD 1208441..1209139 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  DDE72_RS06245 (DDE72_06245) nth 1209158..1209817 (+) 660 WP_007612187.1 endonuclease III -
  DDE72_RS06250 (DDE72_06250) - 1209814..1210305 (+) 492 WP_007612186.1 YpoC family protein -
  DDE72_RS06255 (DDE72_06255) - 1210383..1213166 (-) 2784 WP_032873273.1 PBP1A family penicillin-binding protein -
  DDE72_RS06260 (DDE72_06260) recU 1213205..1213813 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  DDE72_RS06265 (DDE72_06265) - 1213855..1214817 (+) 963 WP_032873275.1 DUF2515 domain-containing protein -
  DDE72_RS06270 (DDE72_06270) sspM 1214861..1214965 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DDE72_RS06275 (DDE72_06275) - 1215171..1215416 (+) 246 WP_032873277.1 DUF5446 family protein -
  DDE72_RS06280 (DDE72_06280) - 1215462..1215830 (+) 369 WP_007409492.1 YppE family protein -
  DDE72_RS06285 (DDE72_06285) - 1215869..1216051 (-) 183 WP_003153532.1 YppF family protein -
  DDE72_RS06290 (DDE72_06290) - 1216238..1216705 (+) 468 WP_029973659.1 YppG family protein -
  DDE72_RS06295 (DDE72_06295) - 1216735..1217148 (-) 414 WP_017418017.1 hypothetical protein -
  DDE72_RS06300 (DDE72_06300) - 1217287..1217793 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=289502 DDE72_RS06260 WP_012117837.1 1213205..1213813(-) (recU) [Bacillus velezensis strain LDO2]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=289502 DDE72_RS06260 WP_012117837.1 1213205..1213813(-) (recU) [Bacillus velezensis strain LDO2]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGATCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment