Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECIAI1_RS02370 Genome accession   NC_011741
Coordinates   509162..509767 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli IAI1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 504162..514767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI1_RS25815 - 504716..504814 (+) 99 Protein_447 hypothetical protein -
  ECIAI1_RS02340 (ECIAI1_0469) rsmS 504867..505028 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECIAI1_RS02345 (ECIAI1_0470) priC 505042..505569 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  ECIAI1_RS02350 (ECIAI1_0471) ybaN 505639..506016 (+) 378 WP_001188905.1 DUF454 family protein -
  ECIAI1_RS02355 (ECIAI1_0472) apt 506169..506720 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECIAI1_RS02360 (ECIAI1_0473) dnaX 506849..508780 (+) 1932 WP_000122009.1 DNA polymerase III subunit gamma/tau -
  ECIAI1_RS02365 (ECIAI1_0474) ybaB 508833..509162 (+) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  ECIAI1_RS02370 (ECIAI1_0475) recR 509162..509767 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECIAI1_RS02375 (ECIAI1_0476) htpG 509877..511751 (+) 1875 WP_000678187.1 molecular chaperone HtpG -
  ECIAI1_RS02380 (ECIAI1_0477) adk 511932..512576 (+) 645 WP_001345715.1 adenylate kinase -
  ECIAI1_RS02385 (ECIAI1_0478) hemH 512708..513670 (+) 963 WP_001250120.1 ferrochelatase -
  ECIAI1_RS02390 (ECIAI1_0479) aes 513667..514626 (-) 960 WP_000801838.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=28950 ECIAI1_RS02370 WP_001195025.1 509162..509767(+) (recR) [Escherichia coli IAI1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=28950 ECIAI1_RS02370 WP_001195025.1 509162..509767(+) (recR) [Escherichia coli IAI1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443