Detailed information NTG0289478

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJC75_RS12610
• Genome accession: NZ_CP034404
• Coordinates: 2202134..2203126 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CRE10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2197134..2208126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJC75_RS12585 (EJC75_12585)	ygbN	2197790..2199154 (+)	1365	WP_000104429.1	GntP family transporter	-
EJC75_RS12590 (EJC75_12590)	-	2199193..2199429 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EJC75_RS12595 (EJC75_12595)	-	2199440..2200866 (-)	1427	Protein_2088	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EJC75_RS12600 (EJC75_12600)	-	2200866..2201459 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EJC75_RS12605 (EJC75_12605)	-	2201606..2202013 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
EJC75_RS12610 (EJC75_12610)	rpoS	2202134..2203126 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EJC75_RS12615 (EJC75_12615)	nlpD	2203189..2204283 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EJC75_RS12620 (EJC75_12620)	pcm	2204468..2205093 (-)	626	Protein_2093	protein-L-isoaspartate O-methyltransferase	-
EJC75_RS12625 (EJC75_12625)	surE	2205087..2205854 (-)	768	Protein_2094	5'/3'-nucleotidase SurE	-
EJC75_RS12630 (EJC75_12630)	truD	2205835..2206886 (-)	1052	Protein_2095	tRNA pseudouridine(13) synthase TruD	-
EJC75_RS12635 (EJC75_12635)	ispF	2206896..2207363 (-)	468	WP_129484044.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJC75_RS12640 (EJC75_12640)	ispD	2207363..2208073 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=289478 EJC75_RS12610 WP_000081550.1 2202134..2203126(-) (rpoS) [Escherichia coli strain CRE10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=289478 EJC75_RS12610 WP_000081550.1 2202134..2203126(-) (rpoS) [Escherichia coli strain CRE10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715