Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJC75_RS09150 Genome accession   NZ_CP034404
Coordinates   1474979..1475455 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain CRE10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1469979..1480455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJC75_RS09120 (EJC75_09120) - 1470146..1472662 (+) 2517 WP_001348608.1 hypothetical protein -
  EJC75_RS09125 (EJC75_09125) - 1472738..1473193 (+) 456 WP_000581504.1 IrmA family protein -
  EJC75_RS09130 (EJC75_09130) - 1473272..1473505 (+) 234 WP_001119729.1 DUF905 family protein -
  EJC75_RS09140 (EJC75_09140) - 1473605..1474423 (+) 819 WP_001234630.1 DUF932 domain-containing protein -
  EJC75_RS09145 (EJC75_09145) - 1474478..1474963 (+) 486 WP_000849582.1 antirestriction protein -
  EJC75_RS09150 (EJC75_09150) radC 1474979..1475455 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  EJC75_RS09155 (EJC75_09155) yeeT 1475518..1475739 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EJC75_RS09160 (EJC75_09160) cbeA 1475902..1476273 (+) 372 WP_129484035.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EJC75_RS09165 (EJC75_09165) - 1476363..1476740 (+) 378 WP_000854751.1 TA system toxin CbtA family protein -
  EJC75_RS09170 (EJC75_09170) - 1476737..1476886 (+) 150 Protein_1426 DUF5983 family protein -
  EJC75_RS09175 (EJC75_09175) - 1476986..1477066 (+) 81 Protein_1427 hypothetical protein -
  EJC75_RS09180 (EJC75_09180) - 1477355..1477483 (-) 129 Protein_1428 transposase domain-containing protein -
  EJC75_RS09185 (EJC75_09185) - 1477555..1477737 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EJC75_RS09190 (EJC75_09190) tmaR 1477838..1478167 (-) 330 WP_000450409.1 DUF496 family protein -
  EJC75_RS09195 (EJC75_09195) yeeA 1478339..1479397 (-) 1059 WP_001200910.1 FUSC family protein -
  EJC75_RS09200 (EJC75_09200) sbmC 1479595..1480068 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=289464 EJC75_RS09150 WP_001186726.1 1474979..1475455(+) (radC) [Escherichia coli strain CRE10]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=289464 EJC75_RS09150 WP_001186726.1 1474979..1475455(+) (radC) [Escherichia coli strain CRE10]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTTGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment