Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJC75_RS03965 Genome accession   NZ_CP034404
Coordinates   445243..445719 (+) Length   158 a.a.
NCBI ID   WP_129484016.1    Uniprot ID   -
Organism   Escherichia coli strain CRE10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 440243..450719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJC75_RS03935 (EJC75_03935) - 440372..442888 (+) 2517 WP_001531238.1 hypothetical protein -
  EJC75_RS03940 (EJC75_03940) - 442964..443419 (+) 456 WP_000581506.1 IrmA family protein -
  EJC75_RS03945 (EJC75_03945) - 443520..443728 (+) 209 Protein_408 DUF905 family protein -
  EJC75_RS03955 (EJC75_03955) - 443829..444650 (+) 822 WP_001761104.1 DUF932 domain-containing protein -
  EJC75_RS03960 (EJC75_03960) - 444742..445227 (+) 486 WP_000214307.1 antirestriction protein -
  EJC75_RS03965 (EJC75_03965) radC 445243..445719 (+) 477 WP_129484016.1 RadC family protein Machinery gene
  EJC75_RS03970 (EJC75_03970) - 445782..446003 (+) 222 WP_000692298.1 DUF987 domain-containing protein -
  EJC75_RS03975 (EJC75_03975) - 446022..446705 (+) 684 WP_000086768.1 hypothetical protein -
  EJC75_RS03980 (EJC75_03980) - 446716..447096 (+) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EJC75_RS03985 (EJC75_03985) - 447177..447560 (+) 384 WP_000854686.1 TA system toxin CbtA family protein -
  EJC75_RS03990 (EJC75_03990) - 447557..448045 (+) 489 WP_032180032.1 DUF5983 family protein -
  EJC75_RS03995 (EJC75_03995) - 448062..448259 (+) 198 WP_000839253.1 DUF957 domain-containing protein -
  EJC75_RS04000 (EJC75_04000) - 448344..449185 (+) 842 Protein_418 DUF4942 domain-containing protein -
  EJC75_RS04010 (EJC75_04010) ghrA 449656..450594 (+) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.34 Da        Isoelectric Point: 7.6152

>NTDB_id=289452 EJC75_RS03965 WP_129484016.1 445243..445719(+) (radC) [Escherichia coli strain CRE10]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPNHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=289452 EJC75_RS03965 WP_129484016.1 445243..445719(+) (radC) [Escherichia coli strain CRE10]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGAACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment