Detailed information NTG0289340

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJH97_RS05605
• Genome accession: NZ_CP034389
• Coordinates: 1152375..1153367 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RS571
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1147375..1158367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJH97_RS05575 (EJH97_05575)	ispD	1147436..1148146 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EJH97_RS05580 (EJH97_05580)	ispF	1148146..1148625 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJH97_RS05585 (EJH97_05585)	truD	1148622..1149671 (+)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
EJH97_RS05590 (EJH97_05590)	surE	1149652..1150413 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EJH97_RS05595 (EJH97_05595)	pcm	1150407..1151033 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EJH97_RS05600 (EJH97_05600)	nlpD	1151218..1152312 (+)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
EJH97_RS05605 (EJH97_05605)	rpoS	1152375..1153367 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EJH97_RS05610 (EJH97_05610)	-	1153488..1153895 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
EJH97_RS05615 (EJH97_05615)	-	1154042..1154636 (+)	595	Protein_1094	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EJH97_RS05620 (EJH97_05620)	-	1154636..1156063 (+)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EJH97_RS05625 (EJH97_05625)	-	1156074..1156310 (+)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EJH97_RS05630 (EJH97_05630)	pphB	1156351..1157007 (-)	657	WP_022646027.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=289340 EJH97_RS05605 WP_000081550.1 1152375..1153367(+) (rpoS) [Escherichia coli strain RS571]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=289340 EJH97_RS05605 WP_000081550.1 1152375..1153367(+) (rpoS) [Escherichia coli strain RS571]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715