Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EJB16_RS18350 Genome accession   NZ_CP034384
Coordinates   3632895..3633410 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157:H7 strain FRIK804     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627895..3638410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJB16_RS18320 (EJB16_18995) ygaZ 3628294..3629031 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EJB16_RS18325 (EJB16_19000) ygaH 3629021..3629356 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  EJB16_RS18335 (EJB16_19005) emrR 3629447..3629977 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EJB16_RS18340 (EJB16_19010) emrA 3630104..3631276 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EJB16_RS18345 (EJB16_19015) emrB 3631293..3632831 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EJB16_RS18350 (EJB16_19020) luxS 3632895..3633410 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  EJB16_RS18355 (EJB16_19025) gshA 3633560..3635116 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  EJB16_RS18360 (EJB16_19030) yqaA 3635189..3635617 (-) 429 WP_001287450.1 YqaA family protein -
  EJB16_RS18365 (EJB16_19035) yqaB 3635614..3636180 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EJB16_RS18395 (EJB16_19065) csrA 3637408..3637593 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=289277 EJB16_RS18350 WP_001130215.1 3632895..3633410(-) (luxS) [Escherichia coli O157:H7 strain FRIK804]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=289277 EJB16_RS18350 WP_001130215.1 3632895..3633410(-) (luxS) [Escherichia coli O157:H7 strain FRIK804]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment