Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJB16_RS14500 Genome accession   NZ_CP034384
Coordinates   2839314..2839790 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 strain FRIK804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2834314..2844790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJB16_RS14470 (EJB16_15055) - 2834479..2835384 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  EJB16_RS14475 (EJB16_15060) - 2835381..2836451 (+) 1071 WP_000102658.1 patatin-like phospholipase family protein -
  EJB16_RS14480 (EJB16_15065) - 2836587..2837270 (+) 684 WP_000775497.1 hypothetical protein -
  EJB16_RS14485 (EJB16_15070) - 2837286..2837696 (+) 411 WP_000846711.1 hypothetical protein -
  EJB16_RS14490 (EJB16_15080) - 2837917..2838738 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  EJB16_RS14495 (EJB16_15085) - 2838820..2839299 (+) 480 WP_000860079.1 antirestriction protein -
  EJB16_RS14500 (EJB16_15090) radC 2839314..2839790 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  EJB16_RS14505 (EJB16_15095) yeeT 2839853..2840074 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EJB16_RS14510 (EJB16_15100) cbeA 2840148..2840516 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EJB16_RS14515 (EJB16_15105) cbtA 2840605..2840978 (+) 374 Protein_2886 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EJB16_RS14520 (EJB16_15110) yeeW 2840975..2841169 (+) 195 WP_000988600.1 DUF5983 family protein -
  EJB16_RS14525 (EJB16_15115) - 2841215..2841295 (+) 81 Protein_2888 hypothetical protein -
  EJB16_RS28900 (EJB16_15125) - 2842924..2843070 (-) 147 WP_350446103.1 transposase domain-containing protein -
  EJB16_RS14540 (EJB16_15130) - 2843097..2843279 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  EJB16_RS14545 (EJB16_15135) tmaR 2843380..2843709 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=289267 EJB16_RS14500 WP_001186192.1 2839314..2839790(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=289267 EJB16_RS14500 WP_001186192.1 2839314..2839790(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392