Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJB16_RS05335 Genome accession   NZ_CP034384
Coordinates   1149170..1149646 (+) Length   158 a.a.
NCBI ID   WP_001186714.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain FRIK804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144170..1154646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJB16_RS05315 (EJB16_05465) - 1145447..1146352 (+) 906 WP_021497799.1 diguanylate cyclase regulator RdcB family protein -
  EJB16_RS05320 (EJB16_05470) - 1146349..1147419 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  EJB16_RS05325 (EJB16_05480) - 1147759..1148577 (+) 819 WP_001506712.1 DUF932 domain-containing protein -
  EJB16_RS05330 (EJB16_05485) - 1148669..1149154 (+) 486 WP_001470565.1 antirestriction protein -
  EJB16_RS05335 (EJB16_05490) radC 1149170..1149646 (+) 477 WP_001186714.1 RadC family protein Machinery gene
  EJB16_RS05340 (EJB16_05495) - 1149715..1149936 (+) 222 WP_001220316.1 DUF987 domain-containing protein -
  EJB16_RS05345 (EJB16_05500) - 1150099..1150473 (+) 375 WP_001280952.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EJB16_RS05350 (EJB16_05505) - 1150520..1150897 (+) 378 WP_001506713.1 TA system toxin CbtA family protein -
  EJB16_RS05355 (EJB16_05510) - 1150894..1151382 (+) 489 WP_001470575.1 DUF5983 family protein -
  EJB16_RS05360 (EJB16_05515) - 1151394..1151591 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  EJB16_RS05365 (EJB16_05520) - 1151676..1152518 (+) 843 WP_001688445.1 DUF4942 domain-containing protein -
  EJB16_RS05375 (EJB16_05530) infA 1153009..1153227 (-) 219 WP_001040187.1 translation initiation factor IF-1 -
  EJB16_RS05380 (EJB16_05535) aat 1153512..1154216 (-) 705 WP_001241680.1 leucyl/phenylalanyl-tRNA--protein transferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17771.43 Da        Isoelectric Point: 7.6152

>NTDB_id=289253 EJB16_RS05335 WP_001186714.1 1149170..1149646(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
MQQLSFLPGEMTPGERNLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=289253 EJB16_RS05335 WP_001186714.1 1149170..1149646(+) (radC) [Escherichia coli O157:H7 strain FRIK804]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAACCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment